Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g00011 ATGAAACTGCAGGCACATATTCCGGGGGAGATGTCAGGACAGGTACCTAATCAACCAGGGTCTCAGTTGTCTGGACTGACCCAGCTTAATGGGAATGCACTCGCTCATCAGATGCCACCTTTAGGGGGTGTACCCCGGTCAACAATTAATATGGATCCTGAATTTCTTAGAGCTCGCACTTTTATTCAAGAGAAGATATTTGATATGTTGTTGCAACGACAACAGCAGCCAGTTACAGATGTACAGAGAAAGAAGCTTAAGGATCTTGCAAAGCGCTTGGAGGAGGGCATGTTAAAAGCTGCTCGGTCTAAGGAGGATTACATGAACTTGGATACCTTGGAGAGTCGTTTATCAAATTTCCTCCGACGAGCATCTATGAGTAATCAAAACCAACACTATCCGCAGCTTGTTAACTCTTCTCCTATCAGTACAATGATACCAACACCTGGTATGTCACATGCTCCAAATTCAAGCATGATGGTTGCATCCTCCGTGGATGCGGCAATGATTTATGCCAGCGGGTGTAATAGCATAGCATCAACATCTTTCAATAGTGTAAACATGTTACCAGCTGGTGGCATGCTTGGAAGCACCTTAAATAGATTTGATGGTTTGTCTAATGGTTATCAGCAGTCTTCTACCAGCTTTTCTGTTGGCTCAGGGGGGAACATTTCGTCGATGGGGGGGCAGAGAATTTCTAGCCAGATGATTCCCACTCCTGGATTCTCAGTCAGCAGTAGTCACTCACACATGAACATAGATTCTAATACTAATGGAGGTGCCTTTTCCGGTGTAGAGTCTACTATGGTACCATTGTCACAACTTCAGCAGCAGAAGCAGCATGTTGGTGGCCAAAATAGTCACGTATTGCAGAACCTCAACAGTCAAATGGGTATTGGAATGAGATCTGGTTTACTACAGAAGCCATTTACAAACTCAAATGGTGCTATAAATAGTGGATCAGGGTTGATTGGAAACAATATACAGCTCGCAAACGAACCTGGCACTTCTGACAGCTATGCCTCCACTTATGCCAATTCACCTAAACACTTGCACCAGCACTTTGATCAAAATCAGAAACCAGTAGTGCAAGGTGATGGATATGGATTAAATAATGTTGACAATTTTCCTTCTGGAAACTGTTATACGTCTGCGACATCCTCTGGGCCCATGATGAACAATCAGAACAATAGTTCAGTTAAATTACCATCAATGCCCAAAACTAGCACATTGCTAAGTGGTCACTCGAACTTGCATGGTATGCAGCAGGCTGCTCATATAAAGTCTCAACAAATTAACCAGTTAGAAAAGTTGAATTTTCAGTCTTCATTGACTTCAAGAGATGGCTTTCTGCATTCTCAACAGCAATATCAACAAAGGTCTCAACACTTGCAACAGCCAGATCAGTATGCACAGCAGCAATTTCAATCTATTCAAAGTCCGCAGCCTCAGCATGTGGTTAACAGTGACACTTTCAGTCAGTCTCAGCTTTCTCCCAATGTAGAAAACCGAGTGAAGCCTGAACCTGGAATTGAACACCGTAAAGAAGTGCTAAACTCTCGTGTCTCTGAACAGTTTCACATGTCTGAGACACAGAGTCTGTTCCAGCAGAACTCATCTGAAGATTGCTCTAGGGGTGCTCAACATCCTCCATTTCCATGTGGTCACCATGATTTATCATCATCAACTCCTCAAAATTCACAACAAATGTTGCACCCACATCAATTGGCTGCAGAGCCTCAAAATAATTTTAGCGGTCTTACAGTTGGGGTGCAATCCAAATCTGTGATTCTAAACCAATGGCCTCAATCTCAAGATTGTAACCACATGCCTGACAGTAATTCACATGATCAACATCTCCATGTTGATTTTCATCAAAGAATATCTGGACAAGATGGAGCTCAATGCAATAATTTATCATCAGATGGATCTATTATTGTTCAAAATGTTCTTTCTAGAGGCTTGGCTGAGGAACTGGAATCTGGAATTGCTACAAATAAGGCGCACAGGAATCAACAGAGGTGGCTTTTATTTCTACTTCATGCTAAGCGATGTTCTGCCCCTGAAGGACGATGCAAAGAACGGTTTTGTTCTATTGCACAGAAGCTATGCAAGCACATAGATGTATGCAAAGTGCGCCATTGTCCATATCCTCGTTGCCATCATACAAGGGAGTTACTTCATCATTACGTAAACTGCAAGGATCCAGGTTGCCCTGTTTGTGTTTTTGTGAGAAAGTGTCGACGTGCTTTTCAATTGAAGCCTCAGATTCGGCCGGAACCTGAATCAAGCTTGCCAACTGCAGTGACTGGATCCTGTAAGCCTTACAACATTGTAGGCACATCACCAAGATTGATCTCAAAGCCTCCATTAGTTGTTGAAACTTCTGAGGACCTGCATCCATCTATAAAACGTATAAAGATTGAGCATTGCGCCCAGGCCATTAATCCTGAAAATGACCATTCTGCTTCATCTTTTACTGCAAATAGTGAATCTCTTGTTTCCAGGGATGCTCAATCTCAACCCCGGCCCTATCCCAATGCTGAGAAGTCTATCTCAATTAAACCCGAGTTTACAGAAGTTAAGGCTGAAGCTCCTGCACATGTGATACATGAAAAGCTTAGTGAGATGCAAATGGATAACAATAATGCTGATGATAAAACGCCTAGTGCTGAGCCTGTCAAATATGAAGAACCTGCTAATTTAGCTAGGCATGAAAATATAAAAACTGAGAAAGAAAGTGGACAAGACCGGCAAGAAAATTTTGTGCAGACATCTGAAAATGCAGCTGGAACTAAGTCTGGTAAGCCAAAAATAAAGGGAGTCTCATTAACTGAGTTATTTACTCCAGAGCAAGTCAGGGAACATATCAGTGGACTCAGGCAATGGGTTGGTCAGAGCAAGTCAAAAGCAGAGAAGAATCAAGCAATGGAGCATTCAATGAGTGAGAATTCATGTCAATTGTGTGCTGTAGAGAAGCTTACCTTTGAACCACCACCTATTTATTGCACAACTTGCGGGGTTCGCATCAAACGAAATAATATGTATTATACCACAGGCACTGGGGACACACGACATTATTTTTGTATTCCATGCTATAATGATGCTCGTACAGAGAACATAATTGTTGATGGGACTCCCATTGCCAAGTCAAGATTGGAAAAGAAGAAGAATGATGAGGAAACTGAGGAATGGTGGGTTCAATGTGATAAATGTGAAGCATGGCAACATCAAATTTGTGCCCTATTTAATGGTAGAAGAAATGATGGTGGACAAGCTGAATATACTTGCCCTAACTGCTATATTCAAGAGGTAGAAAGAGGAGAGCGCAAGCCCTTACCCCAAAGTGCTGTTCTTGGCGCCAAGGATTTACCGAGAACTATTCTTAGTGATCACATAGAACAACGATTATTTAGACGGCTAAAGCATGAAAGACAAGAAAGGGCAAGGGTTCAAGGAAAAAGTTATGACGAGATTCCAGGAGCTGATGCTCTTGTTATAAGAGTTGTGTCATCTGTTGACAAAAAGTTAGAAGTGAAACCCCGGTTTCTGGAGATATTTCAGGAAGAGAATTACCCAACAGAATTTCCATATAAATCAAAGGTAGTTTTGTTGTTTCAGAAGATAGAAGGTGTGGAAGTTTGCCTATTTGGCATGTATGTTCAAGAATTTGGATCTGAATCTCAATTCCCAAATCAGCGACGAGTGTATCTTTCGTATCTGGATTCTGTGAAGTATTTTAGGCCTGAGGTTAAAGCAGTTACAGGAGAGGCTCTTCGGACTTTTGTTTACCATGAAATTCTGATTGGATACCTTGAATATTGCAAGAAACGTGGTTTTACAAGCTGCTATATATGGGCTTGTCCTCCATTGAAGGGTGAAGATTATATTTTGTATTGCCATCCAGAAATTCAGAAAACACCAAAATCTGATAAGCTACGTGAATGGTATCTATCCATGTTAAGAAAAGCTTCAAAGGAGAATATTGTGGTCGATCTCACCAACTTATACGATCATTTTTTCGTATCAACTGGTGAATGTCGGGCCAAGGTCACTGCTGCAAGACTCCCATATTTTGATGGCGACTACTGGCCTGGGGCTGCAGAGGATTTAATTTATCAACTTCACCAAGAGGAAGATGGAAGAAAACAAAATAAAAAGGGAACCACTAAAAAGACTATAACAAAAAGGGCTTTAAAAGCGTCTGGTCAGTCAGATCTTTCAGGAAATGCGTCGAAGGACCTGCTCCTCATGCACAAACTTGGTGAAACCATTTGCCCGATGAAGGAAGATTTTATTATGGTTCATTTGCAGCATGCATGTACCAGCTGTTGTATTTTAATGGTGTCTGGTAACCGTTGGGTCTGCAACCAGTGCAAGAATTATCAGATTTGTGATAAGTGTTATGATGTAGAACTAAAGCGTGAAGAGAGAGAAAGACATCCTATTAATCAGAGGGAGAAGCATACTCTTTATCCAGTTGAAATTACTGATGTTCCATCTGATACAAAGGACAAAGATGATATTCTTGAGAGCGAATTCTTTGACACTAGGCAGGCATTTCTGAGTCTCTGCCAGGGAAATCATTACCAGTATGATACACTAAGGCGGGCCAAGCATTCATCAATGATGGTCCTGTATCATCTTCACAATCCAACAGCTCCAGCATTTGTGACAACTTGTAATATATGTTATCTTGACATAGAAACTGGTCAAGGATGGCGCTGTGAGGTTTGCCCTGAGTATGATGTATGCAATGCTTGTTATGAAAAGGATGGAGGTATTGATCATCCTCATAAGTTGACAAATCATCCATCCATGGTTGATCGTGATGCTCAGAACAAAGAAGCAAGGCAGCATCGGGTGTTGCAGCTACGGAAAATGCTTGATCTCCTTGTTCATGCATCCCAATGTCGTTCTGCACATTGTCAATATCCTAATTGTCGCAAGGTGAAGGGGCTTTTCCGCCATGGGATGCACTGCAAAATACGGGCTTCTGGAGGTTGTGTTCTTTGCAAGAAAATGTGGTATTTGCTTCAACTTCATGCTCGTGCTTGCAAAGAATCTGAATGCCACGTACCACGATGCAGAGATTTAAAAGAACATTTAAGGAGGTTGCAGCAACAGTCTGATTCACGGCGTAGAGCTGCTGTAATGGAAATGATGAGGCAGAGAGCTGCAGAAGTTGCTAACAATGCTGGTTGA 5205 0.4183 MKLQAHIPGEMSGQVPNQPGSQLSGLTQLNGNALAHQMPPLGGVPRSTINMDPEFLRARTFIQEKIFDMLLQRQQQPVTDVQRKKLKDLAKRLEEGMLKAARSKEDYMNLDTLESRLSNFLRRASMSNQNQHYPQLVNSSPISTMIPTPGMSHAPNSSMMVASSVDAAMIYASGCNSIASTSFNSVNMLPAGGMLGSTLNRFDGLSNGYQQSSTSFSVGSGGNISSMGGQRISSQMIPTPGFSVSSSHSHMNIDSNTNGGAFSGVESTMVPLSQLQQQKQHVGGQNSHVLQNLNSQMGIGMRSGLLQKPFTNSNGAINSGSGLIGNNIQLANEPGTSDSYASTYANSPKHLHQHFDQNQKPVVQGDGYGLNNVDNFPSGNCYTSATSSGPMMNNQNNSSVKLPSMPKTSTLLSGHSNLHGMQQAAHIKSQQINQLEKLNFQSSLTSRDGFLHSQQQYQQRSQHLQQPDQYAQQQFQSIQSPQPQHVVNSDTFSQSQLSPNVENRVKPEPGIEHRKEVLNSRVSEQFHMSETQSLFQQNSSEDCSRGAQHPPFPCGHHDLSSSTPQNSQQMLHPHQLAAEPQNNFSGLTVGVQSKSVILNQWPQSQDCNHMPDSNSHDQHLHVDFHQRISGQDGAQCNNLSSDGSIIVQNVLSRGLAEELESGIATNKAHRNQQRWLLFLLHAKRCSAPEGRCKERFCSIAQKLCKHIDVCKVRHCPYPRCHHTRELLHHYVNCKDPGCPVCVFVRKCRRAFQLKPQIRPEPESSLPTAVTGSCKPYNIVGTSPRLISKPPLVVETSEDLHPSIKRIKIEHCAQAINPENDHSASSFTANSESLVSRDAQSQPRPYPNAEKSISIKPEFTEVKAEAPAHVIHEKLSEMQMDNNNADDKTPSAEPVKYEEPANLARHENIKTEKESGQDRQENFVQTSENAAGTKSGKPKIKGVSLTELFTPEQVREHISGLRQWVGQSKSKAEKNQAMEHSMSENSCQLCAVEKLTFEPPPIYCTTCGVRIKRNNMYYTTGTGDTRHYFCIPCYNDARTENIIVDGTPIAKSRLEKKKNDEETEEWWVQCDKCEAWQHQICALFNGRRNDGGQAEYTCPNCYIQEVERGERKPLPQSAVLGAKDLPRTILSDHIEQRLFRRLKHERQERARVQGKSYDEIPGADALVIRVVSSVDKKLEVKPRFLEIFQEENYPTEFPYKSKVVLLFQKIEGVEVCLFGMYVQEFGSESQFPNQRRVYLSYLDSVKYFRPEVKAVTGEALRTFVYHEILIGYLEYCKKRGFTSCYIWACPPLKGEDYILYCHPEIQKTPKSDKLREWYLSMLRKASKENIVVDLTNLYDHFFVSTGECRAKVTAARLPYFDGDYWPGAAEDLIYQLHQEEDGRKQNKKGTTKKTITKRALKASGQSDLSGNASKDLLLMHKLGETICPMKEDFIMVHLQHACTSCCILMVSGNRWVCNQCKNYQICDKCYDVELKREERERHPINQREKHTLYPVEITDVPSDTKDKDDILESEFFDTRQAFLSLCQGNHYQYDTLRRAKHSSMMVLYHLHNPTAPAFVTTCNICYLDIETGQGWRCEVCPEYDVCNACYEKDGGIDHPHKLTNHPSMVDRDAQNKEARQHRVLQLRKMLDLLVHASQCRSAHCQYPNCRKVKGLFRHGMHCKIRASGGCVLCKKMWYLLQLHARACKESECHVPRCRDLKEHLRRLQQQSDSRRRAAVMEMMRQRAAEVANNAG 1734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g00011 1734 MobiDBLite consensus disorder prediction 818 847 - -
Phco1g00011 1734 CDD PHD_HAC_like 1028 1100 - -
Phco1g00011 1734 Pfam Zinc finger, ZZ type 1558 1591 IPR000433 GO:0008270
Phco1g00011 1734 FunFam Histone acetyltransferase of the CBP family 12 1432 1491 - -
Phco1g00011 1734 MobiDBLite consensus disorder prediction 530 545 - -
Phco1g00011 1734 SUPERFAMILY TAZ domain 666 747 IPR035898 -
Phco1g00011 1734 MobiDBLite consensus disorder prediction 453 502 - -
Phco1g00011 1734 Pfam Histone acetylation protein 1158 1381 IPR013178 GO:0004402|GO:0006355|GO:0016573
Phco1g00011 1734 MobiDBLite consensus disorder prediction 898 937 - -
Phco1g00011 1734 SMART TAZ_2 666 744 IPR000197 -
Phco1g00011 1734 SMART TAZ_2 1619 1697 IPR000197 -
Phco1g00011 1734 Pfam TAZ zinc finger 673 741 IPR000197 -
Phco1g00011 1734 Pfam TAZ zinc finger 1626 1696 IPR000197 -
Phco1g00011 1734 MobiDBLite consensus disorder prediction 558 572 - -
Phco1g00011 1734 SMART KAT11_2 1151 1448 IPR013178 GO:0004402|GO:0006355|GO:0016573
Phco1g00011 1734 Gene3D - 1555 1609 IPR043145 -
Phco1g00011 1734 SMART zz_5 1555 1601 IPR000433 GO:0008270
Phco1g00011 1734 SMART zz_5 1435 1479 IPR000433 GO:0008270
Phco1g00011 1734 MobiDBLite consensus disorder prediction 818 850 - -
Phco1g00011 1734 ProSiteProfiles Zinc finger ZZ-type profile. 1436 1499 IPR000433 GO:0008270
Phco1g00011 1734 SUPERFAMILY RING/U-box 1416 1490 - -
Phco1g00011 1734 Gene3D TAZ domain 1613 1730 IPR035898 -
Phco1g00011 1734 FunFam Histone acetyltransferase HAC1-like protein 1613 1730 - -
Phco1g00011 1734 SUPERFAMILY RING/U-box 1537 1605 - -
Phco1g00011 1734 PANTHER CBP/P300-RELATED 84 1725 IPR013178 GO:0004402|GO:0006355|GO:0016573
Phco1g00011 1734 MobiDBLite consensus disorder prediction 530 572 - -
Phco1g00011 1734 Gene3D TAZ domain 661 749 IPR035898 -
Phco1g00011 1734 FunFam Histone acetyltransferase HAC1 1555 1606 - -
Phco1g00011 1734 Gene3D - 1432 1492 IPR043145 -
Phco1g00011 1734 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1053 1101 IPR013083 -
Phco1g00011 1734 SUPERFAMILY FYVE/PHD zinc finger 1062 1102 IPR011011 -
Phco1g00011 1734 ProSiteProfiles CBP/p300-type histone acetyltransferase (HAT) domain profile. 1118 1554 IPR031162 GO:0004402
Phco1g00011 1734 MobiDBLite consensus disorder prediction 898 918 - -
Phco1g00011 1734 ProSiteProfiles Zinc finger TAZ-type profile. 1616 1699 IPR000197 -
Phco1g00011 1734 MobiDBLite consensus disorder prediction 453 511 - -
Phco1g00011 1734 SUPERFAMILY TAZ domain 1618 1701 IPR035898 -
Phco1g00011 1734 ProSitePatterns Zinc finger PHD-type signature. 1029 1100 IPR019786 -
Phco1g00011 1734 Pfam PHD-finger 1059 1101 IPR019787 -
Phco1g00011 1734 ProSitePatterns Zinc finger ZZ-type signature. 1561 1588 IPR000433 GO:0008270
Phco1g00011 1734 ProSiteProfiles Zinc finger ZZ-type profile. 1556 1609 IPR000433 GO:0008270
Phco1g00011 1734 ProSiteProfiles Zinc finger TAZ-type profile. 664 744 IPR000197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g00011 Phco-Chr1 156333 168951 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TAZ Phco1g00011 HAT_KAT11 2e-31 CL0257
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco1g00011 1 156333 168951 Phco1g00011 1 156333 168951 ECH