Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco17g00068 ATGGGTCGCTGCCGTGCGGCGTCGGGCCTCGCCGACGATGACCCCAACCTCAGATTAAAGAGAAAAAAGGCTGCTCAGAGCACAGAAAATTCAGAAACTTTACCTACAGGCCAAGGAATAGCTAATAGCAAGGTATCTCTTTATCACTGTAATTATTGCAACAAAGATATTTCGGGGAGGATTCGCATCAAGTGTGCTGTGTGTCAAGATTTTGACCTCTGCATAGAGTGCTTCTCTGTTGGTGCTGAGGTGACACCCCACAAATGCAATCATCCGTATCGGATTATGGATAATCTATCTTTTCCACTTATATGTCCAGATTGGAATGCAGATGAAGAGATGTTACTTCTAGAGGCCATTGAGATGTATGGATTCGGGAACGGGAATGAAGTTGCAGAATATGTTGGAACAAAAAGCAAATCTCAATGTATTGACCACTATAATGCTGTATATATGAATTCACCATGTTTTCCTCTCCCTGATTTGTCTCATGTTATGGGAAAGAGCAGAGACGAACTCTTTGCCATGGTTAAGGGACATGAAGCCAGAAAAGAATTTTCTCCAACTGCTGAGCTTATGCTGAAAGAAGAAGCTCCCTTCTCTGATGTAGTAAGCTATGAAGAAACAAAGAAGGCAGAAATCAATAATCAAGCAATCTCCAGGTTAACCTCAGCATGTGGAAAATCTTACTCAAGTACAATTAAGAAGGCGTCCAACTTGAGCCAAAGTAATGATGAAGTGAAGGTTGAAGGAGAGTCTCAAGCAGATCGGAGTGTTGGAGAAAAGAAACCTAAATTATCAGGGGAAGATAGGCCTTCTATTACAGAGTTGAGTGGATACAGTTTTAAGAGAGAGGAATTTGATGTTGAATACGACAATGATGCTGAGCTAGTGTTGGCTGATATGGAATTTAAGAACACTGACACTGAAGCTGAACATCAAATGAAACTGCACGTGCTCCATATCTATTCAAAAAGGTTAGATGAACGGAAGCGCAGAAAGCATTTTATTCTAGAAAGGGAGTTACTTTATCCTGATCCTTTTGAGAAATCCCTCTTGCCTGAAGAGCTTCAAATTTGTCAACATTACAAGGTCTTCATGCGGTTTCACTCAAAGGAAGAGCATCAGGATTTTCTAAAAAATATTATTGAAGAACACAGGCTTGTCAAAAGAATAAAGGATTTACAGGAAGCTCGAATTGCTGGCTGTGTAACTGCTGGTGATGCTTATCAATTTATCAAAGAAAAGAGGACAAAGGAAGCTGAATCAAGTTCCTGTAAAGAAAGTGGTCAGATTGGAACAAGTGCTAAGACATTACAGAGGCCAAATAATCTCAAAGGAGAAGTTGACATTAGCCCACGGGGTCTTCAAAAGGGGACTGCAGCTTTATTTGCGGATTCTAATGATTCATCTACTGCCATACAAGCCATCACAAGGTCGCTAGAAGAGTGGGATATTAGCGCATTTGCGGGGGCTGAATTTCTATCTGAATCGGAAAAAAAGCTTTGTAATGAGATCAGAATACTACCGTCACACTATCTTAACATGCAGCAGACCATGTCATTAGAAATTTCGAAGGGTAGTGTGACAAAGAAATCTGATGCACACAAATTCTTCAAGGTAGAGCCAAGCAAGGTTGACAGAGTCTATGATATGCTTGTGCAAAAAGGAATTCTGCAAACATAG 1686 0.4069 MGRCRAASGLADDDPNLRLKRKKAAQSTENSETLPTGQGIANSKVSLYHCNYCNKDISGRIRIKCAVCQDFDLCIECFSVGAEVTPHKCNHPYRIMDNLSFPLICPDWNADEEMLLLEAIEMYGFGNGNEVAEYVGTKSKSQCIDHYNAVYMNSPCFPLPDLSHVMGKSRDELFAMVKGHEARKEFSPTAELMLKEEAPFSDVVSYEETKKAEINNQAISRLTSACGKSYSSTIKKASNLSQSNDEVKVEGESQADRSVGEKKPKLSGEDRPSITELSGYSFKREEFDVEYDNDAELVLADMEFKNTDTEAEHQMKLHVLHIYSKRLDERKRRKHFILERELLYPDPFEKSLLPEELQICQHYKVFMRFHSKEEHQDFLKNIIEEHRLVKRIKDLQEARIAGCVTAGDAYQFIKEKRTKEAESSSCKESGQIGTSAKTLQRPNNLKGEVDISPRGLQKGTAALFADSNDSSTAIQAITRSLEEWDISAFAGAEFLSESEKKLCNEIRILPSHYLNMQQTMSLEISKGSVTKKSDAHKFFKVEPSKVDRVYDMLVQKGILQT 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco17g00068 561 Gene3D - 102 153 - -
Phco17g00068 561 FunFam Transcriptional adapter 2 101 153 - -
Phco17g00068 561 SUPERFAMILY Homeodomain-like 476 560 IPR009057 -
Phco17g00068 561 ProSiteProfiles Zinc finger ZZ-type profile. 45 101 IPR000433 GO:0008270
Phco17g00068 561 FunFam Transcriptional adapter 2 476 560 - -
Phco17g00068 561 FunFam Transcriptional adapter 41 96 - -
Phco17g00068 561 MobiDBLite consensus disorder prediction 425 442 - -
Phco17g00068 561 PIRSF Txn_adaptor_ADA2 36 561 IPR016827 GO:0003713|GO:0006357|GO:0035065
Phco17g00068 561 CDD ZZ_ADA2 48 96 IPR041983 -
Phco17g00068 561 SMART zz_5 44 89 IPR000433 GO:0008270
Phco17g00068 561 Gene3D - 475 561 IPR036388 -
Phco17g00068 561 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 47 556 - -
Phco17g00068 561 MobiDBLite consensus disorder prediction 1 37 - -
Phco17g00068 561 Pfam Zinc finger, ZZ type 48 84 IPR000433 GO:0008270
Phco17g00068 561 SMART sant 104 153 IPR001005 -
Phco17g00068 561 MobiDBLite consensus disorder prediction 240 272 - -
Phco17g00068 561 SUPERFAMILY Homeodomain-like 101 154 IPR009057 -
Phco17g00068 561 Gene3D - 41 95 IPR043145 -
Phco17g00068 561 ProSiteProfiles Myb-like domain profile. 108 151 IPR001005 -
Phco17g00068 561 ProSiteProfiles SANT domain profile. 103 155 IPR017884 -
Phco17g00068 561 MobiDBLite consensus disorder prediction 249 270 - -
Phco17g00068 561 ProSitePatterns Zinc finger ZZ-type signature. 50 77 IPR000433 GO:0008270
Phco17g00068 561 Pfam Myb-like DNA-binding domain 107 148 IPR001005 -
Phco17g00068 561 MobiDBLite consensus disorder prediction 423 452 - -
Phco17g00068 561 SUPERFAMILY RING/U-box 48 111 - -
Phco17g00068 561 CDD SANT 108 148 IPR001005 -
Phco17g00068 561 ProSiteProfiles SWIRM domain profile. 475 561 IPR007526 GO:0005515
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Phco17g00068 Myb_DNA-binding 1e-08 CL0123