Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco17g00037 ATGGATTCCAGTGCCAGACAAAGCTTGAAGCGCAAGTTAGCGGAAGAGGTGAAGGATTCTCTCTGCAAGCGACTTCGCCCAACTTTCACTTCTATCATTCTCAAGACTCTCTCTCTCCTCAGCTCTTTCGATCACGCTCTTCTCAACAAACTCATCGCCGTCTTTGTCAAACTCTGCAAAACCACAAAGCATCAACTCCATGAGGATTTTATGGATATTTTGGTGAAGAACGGCGCTATCCAGATTCTGGTGAGGCTACTTCATCTACCGGACGAGGTTGTGGAAGATTGCAGTGACCGAGTTATCCAGACTCGTCTTCTCCAACTGAAGAAAGGGTGCGCGTTCATCCTTGGAACTCTTGCCAGAAAACCGGTGTATCAGCAACTTATCATAGATGCTGGAGCCTTCTTGTGTCTTCTGCGCTTGTTAAAGAGGCACAAGACGATTCCAAAATCTCCATCAGTTGCTGGTTTTCTGAGGAGAGTGGTTGATGCAATATCCAAGCTTGCTTACAAAAATAACAATGCTAAAAGGCTTATCAGAAAGGAAGATGGCATCCCTCCTCTAATTGAATTGCTCGAATTCAAGGTGAAAAAGGTGCAGGTCGCGGCTACAATGGCCTTAGGAACATTGGCATTTAATAATGCTCACAATGCAACTAAGATGGTTGAATGCAACGCATTACCCAGTCTTGTGCTAATGCTTCAATCAGAGGATTCTGTAACACAATTCATGGCGGTGCAACTGATTAAAATAATGGTAGACTCTTCACCGGATATTGGAAGAGAAGTTCTTCTAGCTGGAGCTTTAACACCTGTCATCTGTTTACTTAGTTCCTCCTTTTCGGAGAGCCAAGGATTAGCAGCCCTTCTACTTGGTCACTTTCTCACGACTGATTCAGTTTTGAAGGTTCATATTCCCCAAAGAGGGGCTATTCCACCATTAGTTCACATGCTTCAGTCCCAAAATACTAACCTTCGGAAAGCATCAGCTTTTGTACTTGTGATCTTAGCACAGGACTCACATAATCAAGTTAATATTGCTCATAGTGGAGGTATAGAGCCTATGCTCAATCTTTTTCATTCGGACAATCCAACAGTTCAACAATATGCTGCTCGTGTTCTCTATTGTCTTGCTGATAATGAGGACATTGTTGCAAACATTATTAAAGTTGGAGGGTTTCAAAAGCTAAAGGATTTACATTTCTTCGACGAACCTATCAGAGAGTATGTAGCAATCACGTTATTAAGATTAGAACGAAACATGAGAGGGCGAACACTGAAATACCTAATCTATCTTATGTGCTCTGCGGAAGAACGGGTTAGAAGACATGTAGTTATTGCTCTTGCTCATTTATGTTCTCCTCCAGATCATGAAACTGTATTCATTCACAATCAAGGATTAGAATTGCTGCTGAATATTCTTCAATCTCAATGCGCAATACAGAAGCGCGAGGCTTCAATGGCTCTTAGCATGTTGGCTAGTAGAGCCAATTTCATTTCCTCTCTCATTCAGACTATTTCTCCATCACCAACTTCCCAGATGGACCTGGGCGAGGAATTTGTAAACAATCCAAAGCTTTCTGATATCACATTCCTGGTTGAAGGTGGAGCATCTGCTGCAATTAATTTCGGAAAAATATTTTATGCTCATAAAGATCGTTTAGTTTCTTCAAGTGTATTTCAGACCATGTTTGAGGCAGAGTATTGGGAAAAGGAAACCAAACAAGCAGTGATTCCAAATATTAAATGGGATGTCTTTCAATTAATGATGAGATTTATATACACTGGAACAGTAGATGTCAAATTGGATGATGCTGAAGACCTCCTAAGAGCTTCAGATCAATATCTTCTTGAAGACCTTAAGCTTATTTGTGAACGTGTTATTGCTAAAAGTATTTCACCAGAAAATGTTTCGCTATTGTTGGAGCTCTCAGAAGATTTCAGTGCAAATACATTGAAACATGCATGCATACTGTATATGCTAGAGAAGTTTGATAGATTGCATTCAAAACGATGGTATTATACCATGCTTCATCGCATTGTACCAGACATACATACTCTCTTCTCAACTTTACTTATTATGGATCAAAGCAATGAAGATGCTTCTGTTGCATACTTGTTTCAATAG 2130 0.4047 MDSSARQSLKRKLAEEVKDSLCKRLRPTFTSIILKTLSLLSSFDHALLNKLIAVFVKLCKTTKHQLHEDFMDILVKNGAIQILVRLLHLPDEVVEDCSDRVIQTRLLQLKKGCAFILGTLARKPVYQQLIIDAGAFLCLLRLLKRHKTIPKSPSVAGFLRRVVDAISKLAYKNNNAKRLIRKEDGIPPLIELLEFKVKKVQVAATMALGTLAFNNAHNATKMVECNALPSLVLMLQSEDSVTQFMAVQLIKIMVDSSPDIGREVLLAGALTPVICLLSSSFSESQGLAALLLGHFLTTDSVLKVHIPQRGAIPPLVHMLQSQNTNLRKASAFVLVILAQDSHNQVNIAHSGGIEPMLNLFHSDNPTVQQYAARVLYCLADNEDIVANIIKVGGFQKLKDLHFFDEPIREYVAITLLRLERNMRGRTLKYLIYLMCSAEERVRRHVVIALAHLCSPPDHETVFIHNQGLELLLNILQSQCAIQKREASMALSMLASRANFISSLIQTISPSPTSQMDLGEEFVNNPKLSDITFLVEGGASAAINFGKIFYAHKDRLVSSSVFQTMFEAEYWEKETKQAVIPNIKWDVFQLMMRFIYTGTVDVKLDDAEDLLRASDQYLLEDLKLICERVIAKSISPENVSLLLELSEDFSANTLKHACILYMLEKFDRLHSKRWYYTMLHRIVPDIHTLFSTLLIMDQSNEDASVAYLFQ 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco17g00037 709 Gene3D Potassium Channel Kv1.1; Chain A 518 671 IPR011333 -
Phco17g00037 709 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 351 393 IPR000225 GO:0005515
Phco17g00037 709 ProSiteProfiles BTB domain profile. 528 603 IPR000210 GO:0005515
Phco17g00037 709 Gene3D - 33 260 IPR011989 -
Phco17g00037 709 SMART BTB_4 528 633 IPR000210 GO:0005515
Phco17g00037 709 Pfam BTB/POZ domain 520 631 IPR000210 GO:0005515
Phco17g00037 709 SUPERFAMILY POZ domain 510 631 IPR011333 -
Phco17g00037 709 SUPERFAMILY ARM repeat 161 500 IPR016024 -
Phco17g00037 709 SMART arm_5 67 122 IPR000225 GO:0005515
Phco17g00037 709 SMART arm_5 455 495 IPR000225 GO:0005515
Phco17g00037 709 SMART arm_5 173 213 IPR000225 GO:0005515
Phco17g00037 709 SMART arm_5 215 255 IPR000225 GO:0005515
Phco17g00037 709 SMART arm_5 340 380 IPR000225 GO:0005515
Phco17g00037 709 SMART arm_5 299 339 IPR000225 GO:0005515
Phco17g00037 709 SMART arm_5 381 420 IPR000225 GO:0005515
Phco17g00037 709 SMART arm_5 123 171 IPR000225 GO:0005515
Phco17g00037 709 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 4 695 IPR044282 -
Phco17g00037 709 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 310 352 IPR000225 GO:0005515
Phco17g00037 709 Gene3D - 261 421 IPR011989 -
Phco17g00037 709 Gene3D - 422 509 IPR011989 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Phco17g00037 BTB 1.4e-17 CL0033