Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco17g00021 ATGGCCTCTTCCCACATTCTAGAAAAAGACCCCACCTCCAGATACGCTCGGTATGATGAGGTGCTGGGGAAAGGAGCCTTCAAGACTGTATACAAAGCGTTTGACGAAGTAGACGGAATCGAGGTTGCGTGGAACAGGATCAGCGCGGAGGACGTTGTGCAGACGCCGCAGCAGTTGGAGAAGCTGTATTCGGAGGTTCACTTGCTCAAGACCTTGAAGCACGACAATGTCATCAAGTTGTACAATTATTGGATCGATGATACCACCGCCACTGTCAACATGATCACCGAGTTGTTCACCTCTGGGAGTTTGAGGCAGTACCGCAAGAAGCATAAGAATGTGGATATGAAAGCCATCAAGAACTGGGCACGGCAGATTCTCCGTGGGTTGTGTTTTCTGCACAGTCAGACTCCTCCTATCATTCACAGGGACCTGAAATGTGACAATATTTTTGTCAATGGGAATAGTGGACTGGTTAAGATTGGAGATCTTGGATTAGCTATCGTTATGCAACAGCCTACTGCCCGTAGTGTCATCGGTACACCGGAGTTCATGGCCCCAGAGCTTTACGAGGAGGACTACAATGAACTTGTTGACATATATTCCTTTGGTATGTGCATCTTGGAAATGATCACCTGCGAGTACCCGTACAGTGAATGTAAAAATCCAGCTCAGATATATAAGAAAGTTACCTCTGGTATAAAGCCTGCTGCTCTTGCTAAAGTTAATGATCCTGAAGTGAAGCAATTCATAGAGAAGTGTCTAGTTCCAGCATCACTGAGACTGTCAGCATGTGAACTACTGAAGGACCCTTTCCTTGCAACTGAAAACGCAAAGGAGATCAATCATGATATACTGCAGCTGCCAAATAGTCCTCAAACCAAATTGGTGAATCCACCAATGTGCAAGCCTCATCCCATGGAGATAGATTCTAACTCCAGGTGTAGCTCACCTGGCTCGTCTGTGGGAAGAATTGATGAAACTTCTCAGGTTTCAACTTTTGATCTTGTGAGGATGACGGAGAATAACGAATTTAGGCTAAGAGGGGAGAAAAACGCTGAGAGCACAATTTCACTTACACTGCGAATTACAGATGCACGTGGTGGAGCAAGGAATATCCATTTTCCATTCTACATCGATTCTGATACAGTAATTTCCATTGCTGAGGAGATGGTGGAACATCTGGAACTCACAAATGAGGATGTATCTGTCATTGCAGAGTTAATACAAGACATGATTGTTAAGCTTTCGCCCAACTGGAAGCCCTTGTGTGAGAACCTCTCATCTGGGACAGATCATTTGTACAGGACTTCTTCAGAAGCTCGGAATGATGAACAGTTGAGCTGTCATTGGCCATTACAATCAAGTGATTATGACATGAAGTCGATGTATGAGGATCTGGTTCGTCCAGGGCCTGTGGATGGAGGAGGTTATCAGGAGAAACAAGAATCTGTTATGTCAGATATATCAGCAGAGTGTGGGATTACGATTGCATCAGATTCTAAAGATGTGGAACCCGGCATTTTTATTTTTGATGAATTCTGGGAGGGGTTCGATGTATTCAATTCCAATTCAGATGACAGGTTTAGTGGGCAAGAGGATGATGGACAAAAGAATCAATCAGAGAACTCAGCAGGCTCTCTGATCAATTCATGTTGCAGCCCATCCAAAAACTTCGATATGTCAAGCACAAGTTCTCTTAATCTAGTTGACAAAGACCCTTCAGACGAGCTGCAGTTGGAGCTTGAAGCAATAGAAACACAGTATCAACAATGCTTTCATGAGCTAGTGAAGATGAGGGAGGAAGCTATAGAGAATGCAAAAAGGAGATGGATAACAAGGAAGAAAATACCGGCTACGTGA 1863 0.4423 MASSHILEKDPTSRYARYDEVLGKGAFKTVYKAFDEVDGIEVAWNRISAEDVVQTPQQLEKLYSEVHLLKTLKHDNVIKLYNYWIDDTTATVNMITELFTSGSLRQYRKKHKNVDMKAIKNWARQILRGLCFLHSQTPPIIHRDLKCDNIFVNGNSGLVKIGDLGLAIVMQQPTARSVIGTPEFMAPELYEEDYNELVDIYSFGMCILEMITCEYPYSECKNPAQIYKKVTSGIKPAALAKVNDPEVKQFIEKCLVPASLRLSACELLKDPFLATENAKEINHDILQLPNSPQTKLVNPPMCKPHPMEIDSNSRCSSPGSSVGRIDETSQVSTFDLVRMTENNEFRLRGEKNAESTISLTLRITDARGGARNIHFPFYIDSDTVISIAEEMVEHLELTNEDVSVIAELIQDMIVKLSPNWKPLCENLSSGTDHLYRTSSEARNDEQLSCHWPLQSSDYDMKSMYEDLVRPGPVDGGGYQEKQESVMSDISAECGITIASDSKDVEPGIFIFDEFWEGFDVFNSNSDDRFSGQEDDGQKNQSENSAGSLINSCCSPSKNFDMSSTSSLNLVDKDPSDELQLELEAIETQYQQCFHELVKMREEAIENAKRRWITRKKIPAT 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco17g00021 620 Gene3D - 355 448 - -
Phco17g00021 620 CDD STKc_WNK 14 273 - -
Phco17g00021 620 FunFam Probable serine/threonine-protein kinase WNK1 1 97 - -
Phco17g00021 620 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 357 413 IPR024678 GO:0004674|GO:0005524
Phco17g00021 620 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 7 600 - -
Phco17g00021 620 Coils Coil 575 602 - -
Phco17g00021 620 FunFam probable serine/threonine-protein kinase WNK9 99 278 - -
Phco17g00021 620 ProSiteProfiles Protein kinase domain profile. 16 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco17g00021 620 Gene3D Transferase(Phosphotransferase) domain 1 99 281 - -
Phco17g00021 620 SMART serkin_6 16 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco17g00021 620 MobiDBLite consensus disorder prediction 525 547 - -
Phco17g00021 620 ProSitePatterns Serine/Threonine protein kinases active-site signature. 140 152 IPR008271 GO:0004672|GO:0006468
Phco17g00021 620 Pfam Protein kinase domain 19 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco17g00021 620 Gene3D Phosphorylase Kinase; domain 1 2 97 - -
Phco17g00021 620 SUPERFAMILY Protein kinase-like (PK-like) 18 312 IPR011009 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Phco17g00021 Pkinase 6.6e-52 CL0016