Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco17g00015 ATGAAAGGGAAGGGCAGAGAATTTATAGATTCGGCATCCTCATCGGTGCTCTCAAACGCACTTCAGCAGCGTCTCCAGTTCATTCTGCAGACCCGTCCGGAGTGGTGGGTGTATGCCATATTCTGGCAAGCCACCAAAGAAAGCGACTCCTGTCTTACACTAGAATACGGCGACGGCTTCTTCATGGGCGCAAAGGGCAGAGAGGGAACGGAAGTCAGAATGTCTGAGGAGCAAACGAGGAACCACGTGAGCGATATCGAATGGTTCTACAGGGTGTCGCAAACTCGGTCCTATGCCGCCGGGGACGGTGTGGTCGGGTGTGCCTTCGGGTCGGGGGTGGATGTTTGGTTGAGCGGAGTGAACGAGTTTGAAGTGAACGAGTGTGACGAGAGAGTGGGGGAAGCACGAAGGCACGGGATCCAGACTTTAGTGTGCGTGTCGGTGGCATGTGGGATCCTTGAGCTGGGTTCGCATGAGGTGCTGAAGCTGGATTATGGTGTTCTGCAAATGGTGAAATCAGTGTTTGAGGAGCGGGAGAGTGGGAGTGAGAATCCGGGGCGCAAGCGGTGGATGGCGGTTCCCGGGAAGGAGAAAGAGAAAGAGAGGAGAAGAGAGTTGGAGGGATCGTCGACGGACTCCTCAGGGCCTTCTGATCATGATGCGGAGGCTCTTTTGGCCTTTGTGGAAGCCAACAACAGCGTTCCCATGATGGGGAGAAGGGCGGGGAGGGAACGTGAGACGCTTCCCATAAATCACGTGGAGGCCGAGAGGCAGCGGCGAGAGAAGCTGAATCAGAGATTCTACGCTCTTCGCTCCGCCGTCCCTAACGTCTCTAAGATGGACAAGGCCTCCCTGCTTTCGGACGCCGTTGATTATATCAATGAACTGAAGGCCAAAATCAGCCAGCTCCAGTCTGCGCTGGAGGCAGAACCAGAAGCACAAGCACAAGCACAACCCTCCTCTGCAACTACTGACATGAGAGTCGAAGTCCAGATGTTGGGGTCGGAGGCCATGATAAGGGTGCAGAGCCTGAACGTTAACCACCCCTGGGCTCGGTTAATGGATGCTCTGAGGGACGTGAATTTGGAAATTCTGCATGCCACAATCTCCAACATCAAAGAGATGATGCTGCAAGACGTGGTGGTTAGGGTTCCCCATGACCTCATGACCCAAGAGGCCCTCCAAACTGCTATCATGCGCAGACTCTGA 1209 0.5476 MKGKGREFIDSASSSVLSNALQQRLQFILQTRPEWWVYAIFWQATKESDSCLTLEYGDGFFMGAKGREGTEVRMSEEQTRNHVSDIEWFYRVSQTRSYAAGDGVVGCAFGSGVDVWLSGVNEFEVNECDERVGEARRHGIQTLVCVSVACGILELGSHEVLKLDYGVLQMVKSVFEERESGSENPGRKRWMAVPGKEKEKERRRELEGSSTDSSGPSDHDAEALLAFVEANNSVPMMGRRAGRERETLPINHVEAERQRREKLNQRFYALRSAVPNVSKMDKASLLSDAVDYINELKAKISQLQSALEAEPEAQAQAQPSSATTDMRVEVQMLGSEAMIRVQSLNVNHPWARLMDALRDVNLEILHATISNIKEMMLQDVVVRVPHDLMTQEALQTAIMRRL 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco17g00015 402 SMART finulus 253 302 IPR011598 GO:0046983
Phco17g00015 402 Pfam Helix-loop-helix DNA-binding domain 251 296 IPR011598 GO:0046983
Phco17g00015 402 PANTHER MYC 17 401 IPR045084 GO:0003700|GO:0006355
Phco17g00015 402 MobiDBLite consensus disorder prediction 176 209 - -
Phco17g00015 402 MobiDBLite consensus disorder prediction 176 219 - -
Phco17g00015 402 Gene3D - 241 311 IPR036638 GO:0046983
Phco17g00015 402 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 21 175 IPR025610 -
Phco17g00015 402 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 247 296 IPR011598 GO:0046983
Phco17g00015 402 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 248 315 IPR036638 GO:0046983
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phco17g00015 bHLH-MYC_N 1.2e-32 CL0161