Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco16g00019 ATGGAAAGAGAGTTGGAGAGAGGGTATGTGAAGAAGGGGCCATGGAGTAGAGAGGAAGATGAAGTGCTTTTGAGACATGTCAGAAAGTATGGTCCAAGGGAGTGGAGCTCCATTCGATCCAAAGGCTTGTTGCCAAGAACAGGAAAATCTTGTCGCCTTAGATGGGTTAACAAACTTAGACCAAACTTGAAGACTGGATGCAAGTTTACGGCAGAAGAAGAGAGACTGGTGATAGAGTTACAGGCACAGTTTGGGAACAAGTGGGCGAAAATTGCAACGTATTTGGCAGGGAGAACGGACAATGATGTGAAAAACTTTTGGAGCAGTAGGAGAAAAAGGTTGGAGAGGATGTTGCAGAAGCCACCAACGTTAAAGCTGCCGAAAAACAAGGGAAAAACTCCTCTTACTCAACTGCTAGTGGATAAGGCTCCTCCATGCAGTTCAAATGAGGTGGAGGAAAACCTTTCTTATCCTACTTTCTACATGGGAAACACTGATGTGTTCGAGATGATCAACCTTCCAGATTTGATAAAGCCAAACTATCAACAGTTGAAAAATGATTACTTGAGTGCAGTTGAGGTTGAGGCCACCCCACTTCACACAGTACCATCGTTTGAGTCTTCATCGGGGTATAACTTCCCTCTACTCCCTGATCCACTAATGGACTTTCCAGTATTCCCAGAGTACCAGGACCTTGTTCCAGAGTCCTTTGATCTAAATTTTATGGAAGGGTTCGAGGAGAATAAATGTTCGGAATGTGTATGCAGCCAGAAGCTTGGGACTGGGTTGTTGCCAACTCTTGGATTGGAGGAAAATTCTCAAATTACAACTTCAAATGGCTTATTTAAGGACTTCCCAAATGAGATTTTTGAATACTTTGAGCACAATCCAACCTCAACAGAACAATGA 909 0.4334 MERELERGYVKKGPWSREEDEVLLRHVRKYGPREWSSIRSKGLLPRTGKSCRLRWVNKLRPNLKTGCKFTAEEERLVIELQAQFGNKWAKIATYLAGRTDNDVKNFWSSRRKRLERMLQKPPTLKLPKNKGKTPLTQLLVDKAPPCSSNEVEENLSYPTFYMGNTDVFEMINLPDLIKPNYQQLKNDYLSAVEVEATPLHTVPSFESSSGYNFPLLPDPLMDFPVFPEYQDLVPESFDLNFMEGFEENKCSECVCSQKLGTGLLPTLGLEENSQITTSNGLFKDFPNEIFEYFEHNPTSTEQ 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco16g00019 302 FunFam MYB transcription factor 12 64 - -
Phco16g00019 302 ProSiteProfiles Myb-like domain profile. 7 59 IPR001005 -
Phco16g00019 302 FunFam Transcription factor GAMYB 67 136 - -
Phco16g00019 302 SMART sant 11 61 IPR001005 -
Phco16g00019 302 SMART sant 65 113 IPR001005 -
Phco16g00019 302 ProSiteProfiles Myb-like domain profile. 68 111 IPR001005 -
Phco16g00019 302 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 55 IPR017930 -
Phco16g00019 302 Gene3D - 67 136 - -
Phco16g00019 302 Gene3D - 5 65 - -
Phco16g00019 302 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 60 115 IPR017930 -
Phco16g00019 302 CDD SANT 68 107 IPR001005 -
Phco16g00019 302 CDD SANT 14 59 IPR001005 -
Phco16g00019 302 Pfam Myb-like DNA-binding domain 15 65 - -
Phco16g00019 302 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
Phco16g00019 302 PANTHER TRANSCRIPTION FACTOR DUO1 5 301 - -
Phco16g00019 302 Pfam Myb-like DNA-binding domain 68 108 IPR001005 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Phco16g00019 Myb_DNA-bind_6 2.1e-11 CL0123