Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco16g00004 ATGGAATTCTGCAATTGTATTGATCCACAAATGCCAGCTGATGACTTATTGGTGAAATACCAATATATATCTGATTTCTTCATTGCCCTTGCTTATTTCTCAATCCCTTTGGAGCTTATCTACTTTGTTAAGAAATCAGCAGTATTTCCATATAAATGGGTCCTTGTTCAGTTTGGTGCTTTCATAGTTCTATGTGGAGCAACACATCTAATTAATTTATGGACCTTTGTTATTCATTCAAGAACTGTGGCCATTGTAATGACCACTGCTAAGGTTTTAACTGCTGTAGTATCGTGTGCAACTGCCCTCATGCTTGTACATATTATTCCTGATTTATTAAGTGTTAAAACAAGGGAGTTATTTTTGAAGAACAAGGCTGCAGAGCTTGATAGAGAAATGGGCCTGATTCGCACACAGGAAGAAACCGGTCGACATGTTAGGATGTTGACTCATGAGATTAGAAGCACTCTTCATAGACACACAATACTGAAAACGACTCTTGTTGAGCTGGGTAGAACACTGGGACTAGAGGAATGTGCCTTATGGATGCCAACACGAACTGGGTTGGAGCTTCAACTCTCTTACACATTGCGACAACAGAACCCAGTTGGATACACAGTACCCATTCATCTTCCAGTGATCGATCAAGTATTTAGTAGCAACAAGGCAGTAACAATTTCGCATAATTGTCCAGTTGCTAGATTACGACCTTATGCTGGAAAATACATGCCTGGGTCAGTTGTAGCTGTTCGAGTTCCTCTCCTAGATCTTTCTAATTTCCAAATATATGATTGGCCTGAGGTTTCAACAAGAAATTATGCTTTGATGGTTTTGATGCTTCCATCAGATAGTGCTAGACAATGGCATGTGCACGAGTTAGAACTGGTTGAGGTAGTTGCTGACCAGGTAGCTGTCGCTCTTTCACATGCCGCAATCTTAGAAGAGTCAATGAGGGCAAGGGATCAGCTCATGGAGCAGAATGTTGCATTGGATCTGGCAAGAAGAGAAGCAGAAACTGCAATCCGTGCTCGGAATGACTTTCTAGCTGTTATGAACCACGAGATGAGAACTCCCATGCATGCAGTTATTGCACTCTCTTCGTTACTACAGGAAACGGATTTGACAGCTGAGCAACGTCTGATGGTGGAGACAATATTGAAAAGCAGCAATTTGTTGGCTACCCTCATCAATGATGTTTTGGATCTTTCACGGCTTGAAGATGGCAGTCTTCAACTTGAAGCCACAACATTTAACCTTCATTCTTTGTTCAGAGAGGTCCTTAACTTGATTAAGCCTGTTGCATCTGTTAAAAAGTTGTCACTCACTCCACATTTAGCTTCAGATTTGCCAATGTATGCCATTGGTGATGAAAACCGTCTCATGCAAACTATTCTGAATGTTGTTGGTAATGCTGTTAAGTTCTCAAAAGAGGGCTGCATTTCCATCACTGCTTTCGTTGCAAAACCTGAATCGTTTAGAGATGCTAGAATTCCTGACTTTCTTCCAGTGCCAAGTGATAGCCACTTTTATTTGCGAGTACAGGTAAAAGATTCAGGATCAGGAATCAATCCACAAGATATCCCAAAGTTATTCACCAAGTTTGCACAAAACCAATCATTAACAACAAGAAATCCTGCTGGAAGCGGACTTGGCCTGGCAATTTGTAGGAGGTTTGTAAATCTTATGGAAGGGCATATTTGGATTGAAAGCGAAGGTATTGGTAAAGGATGTACAGCCACGTTTATTGTAAAACTTGGAATCGCAGACCGATCAAATGAACTTAAGCTACCTTTTGTACCTAAAGTTCCGGGAAATCCTGTTCATGGATGTACACACTTTGCTGGGCTCAAGGTTCTTGTCATGGATGACAATGGGGTTAGCAGGACAGTAACAAAGGGACTTCTTATGCATTTAGGATGCGATGTTACCACTGCAAGCTCAAGCGAAGAATGCCTTGGTGTTGTTTCTGTGGAACATGAAGTGGTCTTCATGGAAGTTTGTACAGGGTTAGATGGTTATGAACTAGCAGTACGTTTGCATGAGAAGTTTACGAAACATCAAGATAGACCACTGATGGTTGCTCTTACTGGAAACACCAAAAGGGTAACAAAAGAGAACTGTATGAGGGTTGGTATGGATGGCCTTATATTAAAACCTATTTCCGTTGACAAAATGAGGGGTGTTTTATCAGAACTCTTGGAGCGTCGAGTTCTGTTTGAAACTGTTTAA 2229 0.4109 MEFCNCIDPQMPADDLLVKYQYISDFFIALAYFSIPLELIYFVKKSAVFPYKWVLVQFGAFIVLCGATHLINLWTFVIHSRTVAIVMTTAKVLTAVVSCATALMLVHIIPDLLSVKTRELFLKNKAAELDREMGLIRTQEETGRHVRMLTHEIRSTLHRHTILKTTLVELGRTLGLEECALWMPTRTGLELQLSYTLRQQNPVGYTVPIHLPVIDQVFSSNKAVTISHNCPVARLRPYAGKYMPGSVVAVRVPLLDLSNFQIYDWPEVSTRNYALMVLMLPSDSARQWHVHELELVEVVADQVAVALSHAAILEESMRARDQLMEQNVALDLARREAETAIRARNDFLAVMNHEMRTPMHAVIALSSLLQETDLTAEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLEATTFNLHSLFREVLNLIKPVASVKKLSLTPHLASDLPMYAIGDENRLMQTILNVVGNAVKFSKEGCISITAFVAKPESFRDARIPDFLPVPSDSHFYLRVQVKDSGSGINPQDIPKLFTKFAQNQSLTTRNPAGSGLGLAICRRFVNLMEGHIWIESEGIGKGCTATFIVKLGIADRSNELKLPFVPKVPGNPVHGCTHFAGLKVLVMDDNGVSRTVTKGLLMHLGCDVTTASSSEECLGVVSVEHEVVFMEVCTGLDGYELAVRLHEKFTKHQDRPLMVALTGNTKRVTKENCMRVGMDGLILKPISVDKMRGVLSELLERRVLFETV 742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco16g00004 742 Pfam GAF domain 158 307 IPR003018 GO:0005515
Phco16g00004 742 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 329 409 IPR036097 GO:0000155|GO:0007165
Phco16g00004 742 SMART gaf_1 158 317 IPR003018 GO:0005515
Phco16g00004 742 Pfam His Kinase A (phospho-acceptor) domain 344 408 IPR003661 GO:0000155|GO:0007165
Phco16g00004 742 Gene3D - 136 308 IPR029016 -
Phco16g00004 742 FunFam Ethylene receptor 1 310 406 - -
Phco16g00004 742 FunFam Ethylene receptor 1 408 590 - -
Phco16g00004 742 Gene3D - 309 407 - -
Phco16g00004 742 ProSiteProfiles Response regulatory domain profile. 617 733 IPR001789 GO:0000160
Phco16g00004 742 SMART HisKA_10 343 408 IPR003661 GO:0000155|GO:0007165
Phco16g00004 742 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 455 585 IPR003594 -
Phco16g00004 742 SUPERFAMILY GAF domain-like 161 310 - -
Phco16g00004 742 Gene3D - 610 742 - -
Phco16g00004 742 CDD HisKA 341 404 IPR003661 GO:0000155|GO:0007165
Phco16g00004 742 SUPERFAMILY CheY-like 612 735 IPR011006 -
Phco16g00004 742 FunFam Ethylene response sensor 136 308 - -
Phco16g00004 742 ProSiteProfiles Histidine kinase domain profile. 350 589 IPR005467 -
Phco16g00004 742 PIRSF Ethylen_sen_hybr_HK 1 740 IPR014525 GO:0004672|GO:0005789|GO:0009723|GO:0038199|GO:0051740
Phco16g00004 742 Gene3D - 408 593 IPR036890 -
Phco16g00004 742 PRINTS Bacterial sensor protein C-terminal signature 546 564 IPR004358 GO:0016310|GO:0016772
Phco16g00004 742 PRINTS Bacterial sensor protein C-terminal signature 529 539 IPR004358 GO:0016310|GO:0016772
Phco16g00004 742 PRINTS Bacterial sensor protein C-terminal signature 511 525 IPR004358 GO:0016310|GO:0016772
Phco16g00004 742 PANTHER TWO-COMPONENT SENSOR HISTIDINE KINASE 3 735 - -
Phco16g00004 742 SMART HKATPase_4 455 587 IPR003594 -
Phco16g00004 742 Pfam Response regulator receiver domain 618 726 IPR001789 GO:0000160
Phco16g00004 742 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 397 585 IPR036890 -
Phco16g00004 742 SMART REC_2 616 729 IPR001789 GO:0000160
Phco16g00004 742 FunFam Ethylene receptor 610 742 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Phco16g00004 GAF 2.5e-16 CL0161