Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g02462 ATGCTTGAGGGAGACATCAAAGTATTGCTTTCATCAAGTTTTGAAAGACGATTAGTAGCAGAGGGTCAAAGCAGCATCCGTCTAACAGTTGAGTTGAGTCACAAAAATATGATGACATTGGTTGACGAGGTGGAGGTGGAGGTGGAGATGGAGGCGTCGGTGCCAGTAAAGAAGGTGCCGTACGGTGACGTATTCGAGGCGTCCCGCGCTGGCGACGTGGACCGGCTCCGGTACCTGCTGGAGACAGGCGTGAACGTGAACGCGCGGGATCAGTGGGACTCGGTGGCCCTCTACTACGCTTGCCTGACCGGCCACCTCGACGCTGCTCGAATGCTCCTCGAAAACGGCGCCATATGCTCCGAACATACCTTTGACGGCGATCGCTGCCACTACGCGGCCCTCAATCTCAAGGTCCGCAAACTGCTCAAGGCATTCGAGGCCCGGCCTCCGCCCTTGGACCCCTTGCAGGCTGCTTTGCGTGACACCTTCCTCGCCTGTATTTCATCCACTCAGGGGTCCATTTGCTGCCACTTCCCTCCAGATGTAGTATTCATTGTACAAGGAAAACGTATTCAAACTCACAGAGTCATATTAAGTGCGAGGTCACCATTTTTCAAGAAAAAGTTTACTACTGATTGGAAGGATCGCAATGAAGTTAGATTCTCAAGGGAAAGGTTGTCATATCCTGCACTTTATAGCCTTATACACTTCTTTTATTCAGACAGATTAGAGATTGCCATCGATGACATGGAGGATCTTGTGAGAATCTGCAAAGTATGCAGATGTGAATCACTTCATAAAGTTCTTGAGGAAGAAGTAATTCATCAAAAATATGCAGATTATAAAGCACTGGGAGATGTAGATAAATCTCAGAAGCGGTATATTTTACAAGGTATATCCCTTCCTGAAGAAGATAGGCTTCCTGCTGCTTTGCATCGAATCCTTCTGACTGCCCTTTTGAATTCAACCCATGAAAGTGGTCAAGAAGATCAATTGGTTTCTATGATGGATGCCATGCAGATGGCCAAATCTGTGGATGATCTTGCTGATGTTTGTGTAAAAGTTGATAGTAATATTTTCCGCTGTCACCAAGTTATTCTGGCATCCAGGTCAGAATATTTCAAAGCAAGATTATCACATATGAAGGACTTCCATGAGGGGAAATATGAGTTATCTGTTGACACTCTTCCTTGTCTTGAAGAACATGACTTAAGCAGGGAAGCTTTTGAGAAAATGATTGAATATATGTACACTGATCGATTGCAAGATATAAATCCAGATCAGGCTGAGGAAATGTTTGATGTTGCTTCTAGATATTTATTGTTTCCTCTCAAGCGTGCAGTTGCTGATGTCTTGTTGCCACACTTGGAAATGGTGTCACTTGATGAACATTGTCATTGGTTAATACTAGCAGACATGTATGGTGTTATCAAGATTCGGGAGTATTGTCTGGACACCATTGCTTGCAATTTTGAAACTTTTGCTGATAATAAAGAGTTCCGGGCAATGTTGCTGACTTTGCCTCCTCCATCTGGAGACTCGAGCCTTCGTACCACTGTCCCGAGGATTCCTGGATCTTCTCTTAATACTGATCAAGGAAATCTTCTTGATGACTTACGTGAGAAATGGCTTGAAATTGAAGCGGCTGAGCTGGATAAGAGAGATGAGAGTGCTTTGCAATTTGACAAGCGACTAGAGATGCTTATGCTTGTTGCAGAGCAAGAAAAATCATCAGACAATGCTGGTTCAGATGACACTCCTGCATTTCTTCCCAATCACGACACTCATTTAAAGTGA 1797 0.4463 MLEGDIKVLLSSSFERRLVAEGQSSIRLTVELSHKNMMTLVDEVEVEVEMEASVPVKKVPYGDVFEASRAGDVDRLRYLLETGVNVNARDQWDSVALYYACLTGHLDAARMLLENGAICSEHTFDGDRCHYAALNLKVRKLLKAFEARPPPLDPLQAALRDTFLACISSTQGSICCHFPPDVVFIVQGKRIQTHRVILSARSPFFKKKFTTDWKDRNEVRFSRERLSYPALYSLIHFFYSDRLEIAIDDMEDLVRICKVCRCESLHKVLEEEVIHQKYADYKALGDVDKSQKRYILQGISLPEEDRLPAALHRILLTALLNSTHESGQEDQLVSMMDAMQMAKSVDDLADVCVKVDSNIFRCHQVILASRSEYFKARLSHMKDFHEGKYELSVDTLPCLEEHDLSREAFEKMIEYMYTDRLQDINPDQAEEMFDVASRYLLFPLKRAVADVLLPHLEMVSLDEHCHWLILADMYGVIKIREYCLDTIACNFETFADNKEFRAMLLTLPPPSGDSSLRTTVPRIPGSSLNTDQGNLLDDLREKWLEIEAAELDKRDESALQFDKRLEMLMLVAEQEKSSDNAGSDDTPAFLPNHDTHLK 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g02462 598 CDD BACK 465 503 - -
Phco11g02462 598 ProSiteProfiles BTB domain profile. 180 247 IPR000210 GO:0005515
Phco11g02462 598 FunFam BTB/POZ domain-containing protein 58 176 - -
Phco11g02462 598 SMART BTB_4 349 456 IPR000210 GO:0005515
Phco11g02462 598 SMART BTB_4 180 277 IPR000210 GO:0005515
Phco11g02462 598 SUPERFAMILY POZ domain 177 272 IPR011333 -
Phco11g02462 598 ProSiteProfiles BTB domain profile. 349 425 IPR000210 GO:0005515
Phco11g02462 598 Pfam Ankyrin repeats (many copies) 66 113 IPR002110 GO:0005515
Phco11g02462 598 Gene3D - 64 175 IPR036770 -
Phco11g02462 598 ProSiteProfiles Ankyrin repeat profile. 67 91 IPR002110 GO:0005515
Phco11g02462 598 Pfam BTB/POZ domain 178 276 IPR000210 GO:0005515
Phco11g02462 598 Pfam BTB/POZ domain 347 452 IPR000210 GO:0005515
Phco11g02462 598 Gene3D Potassium Channel Kv1.1; Chain A 321 488 IPR011333 -
Phco11g02462 598 CDD BTB_POZ_ZBTB_KLHL-like 348 439 - -
Phco11g02462 598 Gene3D Potassium Channel Kv1.1; Chain A 176 273 IPR011333 -
Phco11g02462 598 SUPERFAMILY Ankyrin repeat 65 144 IPR036770 -
Phco11g02462 598 SUPERFAMILY POZ domain 334 455 IPR011333 -
Phco11g02462 598 MobiDBLite consensus disorder prediction 574 598 - -
Phco11g02462 598 FunFam BTB/POZ domain-containing protein 175 296 - -
Phco11g02462 598 PANTHER ANKYRIN REPEAT AND BTB/POZ DOMAIN-CONTAINING PROTEIN 1 52 572 IPR044515 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Phco11g02462 BTB 1e-14 CL0033