Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g02447 ATGAAGAGACTCAATAACTCAAACACTATGGCTAGTTCCCTTTCCATGTGCCCATCAAAAGGTTTGAATGAGAGGAAGGAAACTCGGGGCTACAGTGAAGATTTTCAAGCAATGTTAGATAGACTAGACCAAGAAGACAGGTATGAAGATTGTAGCTTAGTATTGGAGAAGAAAAGGAGGCTGAGTCTTGACCAGGTGAAGGCCTTAGAGAGAAACTTTGAATTGGACAACAAGCTAGAGCCAGAGCGCAAGTCCAAGCTTGCTCAACAACTAGGCCTTCAACCAAGACAAGTTGCTATTTGGTTCCAAAATCGTCGAGCTCGTTGGAAAACCAAGCAATTGGAGAGAGATTATGGCATTCTCAAGTCCAATTATGATGTTCTCAAGGTTGAGTACAATAATCTTGAGCAAGACAATGAGGCTCTCACTGTTCAGGTAAGAGAATTGAAAGAAAAGTTGTTGAGAGGTAAAGCTGAAAACAATGAGTCAATGAAAGAAGAGTCTCCCATTTCAGAGGTAAGAGACAGAGTAGCATCAGAGAGCAATTCAAATGGTGTGGTTAAGGAAGAAAGCAACATTGATTCTGCTTTTTGTGTGAATGGATCTTTGCCCAGTTCAGGACCAGTACTTCAAAACTCTGATTCAAGAGGGTCACCTGATAAAAATTTTCAGACTCAATTTATGAGAATGGAGGAGCAGAATTTGTTTAGTATCAGTGAGTTCTGTTTCTTTTCAGTTGATCAATCCCCTACCCTGTAA 759 0.4058 MKRLNNSNTMASSLSMCPSKGLNERKETRGYSEDFQAMLDRLDQEDRYEDCSLVLEKKRRLSLDQVKALERNFELDNKLEPERKSKLAQQLGLQPRQVAIWFQNRRARWKTKQLERDYGILKSNYDVLKVEYNNLEQDNEALTVQVRELKEKLLRGKAENNESMKEESPISEVRDRVASESNSNGVVKEESNIDSAFCVNGSLPSSGPVLQNSDSRGSPDKNFQTQFMRMEEQNLFSISEFCFFSVDQSPTL 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g02447 252 PRINTS Lambda-repressor HTH signature 92 108 IPR000047 GO:0003677
Phco11g02447 252 PRINTS Lambda-repressor HTH signature 83 92 IPR000047 GO:0003677
Phco11g02447 252 Coils Coil 118 166 - -
Phco11g02447 252 SUPERFAMILY Homeodomain-like 57 124 IPR009057 -
Phco11g02447 252 Gene3D - 56 119 - -
Phco11g02447 252 FunFam homeobox-leucine zipper protein ATHB-6-like 60 106 - -
Phco11g02447 252 MobiDBLite consensus disorder prediction 1 19 - -
Phco11g02447 252 Pfam Homeobox associated leucine zipper 112 153 IPR003106 GO:0006355|GO:0043565
Phco11g02447 252 Pfam Homeodomain 57 110 IPR001356 GO:0003677
Phco11g02447 252 MobiDBLite consensus disorder prediction 1 26 - -
Phco11g02447 252 SMART HOX_1 55 116 IPR001356 GO:0003677
Phco11g02447 252 MobiDBLite consensus disorder prediction 157 174 - -
Phco11g02447 252 MobiDBLite consensus disorder prediction 157 187 - -
Phco11g02447 252 CDD homeodomain 57 113 IPR001356 GO:0003677
Phco11g02447 252 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 36 192 IPR045224 GO:0003700
Phco11g02447 252 ProSiteProfiles 'Homeobox' domain profile. 52 112 IPR001356 GO:0003677
Phco11g02447 252 ProSitePatterns 'Homeobox' domain signature. 87 110 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g02447 Phco-Chr11 31894235 31895618 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Phco11g02447 Homeodomain 3.1e-16 CL0123