Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g02438 ATGGTTTCTTTGATCCGTCTGAAATTGATCTCAATTCTTATGTTCTACTTACTTGGCACCCTTAACTTTTTACCGACTGAAACAGCCTCAACTTTCAGGCACTATGATTGCACAAACAAGGCAAAGTTTAGTCCCAAAAGCAGTTACCAATTCAACCTGAATAAACTCTTATCTAAACTTACATCCAAAATTAACAGCACCAACTATTACAACACCACAGTGAGTGGAACAAACAAACGAGACATTGTCTATGGCCTCTTCATGTGCAATGGATATATGGAGAAATGTGGAGAATGTGTAAATACTTCCATACAGACACTTAAATCAAAGTGTGTCTTCAACAAAAAGGCTTTAGTTTGGACTCATGAATGCCTGGTTCGCTACTCAGACAGGTTTTTCTCCGACACTACTGAGAAATGGCCATCATGGTGTGTTAGGAAGAATGAGGATTATGAGGGGGAATTGGATAGTTTCAACAAAGTGCTGAGTTCCTTGATGGAGGATATTCTGACTAAAGCCAGTGAAGCTCCAATGGGTTCCATTAAATTTGCTGTGAAGAAAATAACCATCTCTGAGGACAAGCACTTTTTTGGCTTTGCTCAGTGCACCCCATACCTCTCCAAGGAAAATTGCAAGAAGTGCCTTAGGGATGCCATAAATTTTCTTCAAACATGTGCAAGAGGCAAGATAGGAGGAACAGTTATATATCCGAGCTGTATTGTTAGATATGATCATTATCTGTTTTTCCCACTTCCTAGAGGAAAAAGAAAGAATCTGGGAGTAATTGCATCGATCATATTTTTTCATGCCCTTGTTCCAGTCATTGTTTTGTTTTTTGTTTGCTATTTGCTACACAGGGAGTCAAGGAAGTATCTCAAGCACCGAAAAGGAAATTGTGGGGAAGAGATTTCAACAGAATTGAACTCTTTGCAATTTGAATTGAGAAGTATTCAAGAAGCAACAAACAAGTTTTCTGATGATAACAAGATAGGAGAAGGTGGTTTTGGAGCAGTTTACAAGGGTGGTTTTTCAAATGGACTTGAAATAGCCGTAAAGAGGCTAAAGAAAAATTCCAGTCAAGGAGCTATAGAATTCAAGAAAGAGGTTTTGCTGATTTCCAAACTTCAACACAGAAATCTTGTGAGACTGTTAGGATTTTGCGTGGAAAGGAATGAAAAGATACTCATTTATGAGTTTGTGCACAACAAAAGCCTTGACTACTACCTCTTTAGCCCTCAAAACCATAGGAAATTAAGTTGGACTGAAAGATACGAGATTATAAAAGGAATTGCACGAGGAATTCTCTATCTCCATGAGGATTCTCATCTTAACATTATACACTGTGATCTTAAACCTAGTAACATTTTGTTAGACAACAAAATGAATGCAAAGATATCAGATTTTGGACTAGCAAGGATTATTTCCATTGATCAAATGCAAGGGAACACTAGTATAATTTCTGGAACATATGGTTATATGTCTCCTGAATATGCAATGCTTGGTCAATTTTCTATGAAATCTGATGTTTTTAGTTTTGGAGTTATAGTTCTTGAAATCATCAGTGGAAAAAGAAACGTTGATGGTAATGGTAAAGATTTCGATGATCTCTTGAGCCATGCTTGGAAGAAGTGGAAGGAAAATGAAGTATTTGAATTGTTGGATCCCTCATTACAACACTCCTTCTCTGAAACAGAAATCAGTAAGTGTGTACAAGTTGGTCTATTATGTGTGCAAGGAAACCCAGATCAGAGACCTATCATGGCAAAAATTGCTTTGTATTTTAGCTGTGAGCAAGTTGAGATGCTGCCTTCACCTCAAGAACCAGCATTTTTCAATCGTGGAAAAATAGAGACCAAGGATGTATAA 1866 0.3735 MVSLIRLKLISILMFYLLGTLNFLPTETASTFRHYDCTNKAKFSPKSSYQFNLNKLLSKLTSKINSTNYYNTTVSGTNKRDIVYGLFMCNGYMEKCGECVNTSIQTLKSKCVFNKKALVWTHECLVRYSDRFFSDTTEKWPSWCVRKNEDYEGELDSFNKVLSSLMEDILTKASEAPMGSIKFAVKKITISEDKHFFGFAQCTPYLSKENCKKCLRDAINFLQTCARGKIGGTVIYPSCIVRYDHYLFFPLPRGKRKNLGVIASIIFFHALVPVIVLFFVCYLLHRESRKYLKHRKGNCGEEISTELNSLQFELRSIQEATNKFSDDNKIGEGGFGAVYKGGFSNGLEIAVKRLKKNSSQGAIEFKKEVLLISKLQHRNLVRLLGFCVERNEKILIYEFVHNKSLDYYLFSPQNHRKLSWTERYEIIKGIARGILYLHEDSHLNIIHCDLKPSNILLDNKMNAKISDFGLARIISIDQMQGNTSIISGTYGYMSPEYAMLGQFSMKSDVFSFGVIVLEIISGKRNVDGNGKDFDDLLSHAWKKWKENEVFELLDPSLQHSFSETEISKCVQVGLLCVQGNPDQRPIMAKIALYFSCEQVEMLPSPQEPAFFNRGKIETKDV 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g02438 621 Gene3D - 29 133 IPR038408 -
Phco11g02438 621 Gene3D - 142 248 IPR038408 -
Phco11g02438 621 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 49 612 - -
Phco11g02438 621 Gene3D Phosphorylase Kinase; domain 1 286 399 - -
Phco11g02438 621 FunFam cysteine-rich receptor-like protein kinase 10 400 601 - -
Phco11g02438 621 ProSiteProfiles Protein kinase domain profile. 324 594 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco11g02438 621 Pfam Protein tyrosine and serine/threonine kinase 327 591 IPR001245 GO:0004672|GO:0006468
Phco11g02438 621 SMART serkin_6 324 562 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco11g02438 621 CDD STKc_IRAK 330 591 - -
Phco11g02438 621 Pfam Salt stress response/antifungal 37 130 IPR002902 -
Phco11g02438 621 Pfam Salt stress response/antifungal 149 246 IPR002902 -
Phco11g02438 621 FunFam Cysteine-rich receptor-like protein kinase 10 286 399 - -
Phco11g02438 621 ProSitePatterns Protein kinases ATP-binding region signature. 330 352 IPR017441 GO:0005524
Phco11g02438 621 ProSiteProfiles Gnk2-homologous domain profile. 139 248 IPR002902 -
Phco11g02438 621 Coils Coil 148 168 - -
Phco11g02438 621 ProSiteProfiles Gnk2-homologous domain profile. 31 133 IPR002902 -
Phco11g02438 621 Gene3D Transferase(Phosphotransferase) domain 1 400 601 - -
Phco11g02438 621 ProSitePatterns Serine/Threonine protein kinases active-site signature. 445 457 IPR008271 GO:0004672|GO:0006468
Phco11g02438 621 SUPERFAMILY Protein kinase-like (PK-like) 309 606 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g02438 Phco-Chr11 31526226 31528952 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Phco11g02438 PK_Tyr_Ser-Thr 4.2e-47 CL0016