Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g02410 ATGGCTTTCACACTAGAGAGGTTTGAGGAGAACATGGTGTTCTCTTTTGAGTCTCAGAAGTCAGTTCCAGCACCTTTCCTCACAAAGACATATCAGCTAGTTGATGACCCTCTCACTGACCACATTGTTTCATGGGGTGAAGATGACACTACATTTGTTGTGTGGAGACCCCCTGAGTTTTCCAGAGATCTTCTTCCCAACTACTTCAAACACAACAACTTCTCAAGCTTTGTTAGGCAACTCAACACCTATGGTTTCAAGAAGGTAGTTGCTGATAGGTGGGAGTTTGCGAATGAGTACTTCAAAAAAGGAGCTAAGCACCTTTTGTGTGAAATACACAGGAGGAAAACACCTCAGCTACATCACCAACTCTACAATGACCAACCACCATCCCAGATTCTTCAACAAGATGAAAGTCTCAGCTGGCTTGACACCCCACTTTCATCTCCAAAACCAAGCACAGACATTCTAACAGCCCTTTCTGAAGACAACCATAGACTAAGGAGAAAGAACTTCATGCTCTTGTCAGAACTTAGTCACATGAAGAGTTTGTACAATGACATAATATATTTCATCCAAAACCATGTAAAAGCAGCACCCTTTGAACAAAGAACCAGAAGTGCCATTCAAAAGCTGGTGGAGTTTGACTCATTGAATGAGCCTATAAATAACATAAGTCTCAGAACTTCAAAAAGTAGTTTTGTGGATAAATCCTTATTCACTTCTACTGAAGAATCAGACAGTTCTGTGAAGCTCTTTGGGGTCCTTCTAAGTGGCAGAAAGAGATTGCACCCAGATAACATTAATTGA 810 0.4111 MAFTLERFEENMVFSFESQKSVPAPFLTKTYQLVDDPLTDHIVSWGEDDTTFVVWRPPEFSRDLLPNYFKHNNFSSFVRQLNTYGFKKVVADRWEFANEYFKKGAKHLLCEIHRRKTPQLHHQLYNDQPPSQILQQDESLSWLDTPLSSPKPSTDILTALSEDNHRLRRKNFMLLSELSHMKSLYNDIIYFIQNHVKAAPFEQRTRSAIQKLVEFDSLNEPINNISLRTSKSSFVDKSLFTSTEESDSSVKLFGVLLSGRKRLHPDNIN 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g02410 269 Gene3D - 17 117 IPR036388 -
Phco11g02410 269 SMART hsfneu3 22 115 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco11g02410 269 Pfam HSF-type DNA-binding 26 115 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco11g02410 269 FunFam Heat stress transcription factor B-4 18 116 - -
Phco11g02410 269 ProSitePatterns HSF-type DNA-binding domain signature. 65 89 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco11g02410 269 SUPERFAMILY "Winged helix" DNA-binding domain 23 115 IPR036390 -
Phco11g02410 269 PRINTS Heat shock factor (HSF) domain signature 77 89 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco11g02410 269 PRINTS Heat shock factor (HSF) domain signature 26 49 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco11g02410 269 PRINTS Heat shock factor (HSF) domain signature 64 76 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco11g02410 269 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 20 206 IPR027725 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g02410 Phco-Chr11 29596570 29597868 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Phco11g02410 HSF_DNA-bind 2.4e-32 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g02410 11 29596570 29597868 Phco11g02410 11 29596570 29597868 ECH
Phco11g02410 11 29596570 29597868 Phco3g00991 3 8346801 8347920 PCT