Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Phco11g02401 | ATGGGCAACTGTTGCTCTCAAGGCAACGCTGCCGATGGCCCGGCTGACAACACCGCGGCAGATGACAAGGGAGAAACCAACCAACAAACTGACAATCATTTAAACAATAAGAATAATGAAGATGATTCTGCCCCAAACCCTACCACCCCACCGGCATCCTCACCACCACCTACAGTCACACCACCTCCTTCAAAATCCTTAAAACCGGCCGCCATGGGCCCTGTCCTACAGCGGCCCATGGAGGACGTGAGAGCAGCCTACACCATTGGGAAGGAGCTAGGGAGAGGCCAATTTGGTGTCACACATTTGTGCACAGACAAAACAAGTGGTGAACAATTTGCATGCAAAACCATTGCCAAGAGGAAGCTCGTGAGCAAGGAGGATATAGAGGATGTGAGAAGAGAGGTGGAAATCATGCACCACCTCTCACGCCAACCTAACATTGTGGAGCTTAAAGGTGCCTATGAGGATAAACAATCGGTGCATTTGGTGATGGAGCTTTGTGCTGGTGGTGAACTTTTCGATCGTATCATTGCTAAGGGACATTACACTGAACGTGCTGCAGCTTCTTTGCTCAGAACCATTGTGCAGATTGTTCATACCTTCCATTCCATGGGTGTCATTCACCGAGATCTTAAGCCTGAGAATTTCCTCTTGTTGAATAAGGATGAAAATGCACCCCTCAAGGCCACGGATTTTGGTCTATCCGTTTTCTTCAAAGAAGGAGAGACGTTCAAAGATATTGTTGGAAGTGCATATTACATTGCTCCTGAGGTTTTGAAGAGGAAATATGGGCCTGAAGTTGATATATGGAGTGTTGGTGTCATGCTATACATTCTTCTATCTGGTGTTCCTCCATTTTGGGCAGAATCCGAACATGGTATATTCAATGCCATCCTAAGAGGCCACGTTGATTTTACAAGCGATCCATGGCCTTCAATTTCACCTTCAGCAAAGGATCTTGTAAGTAACATGTTGAATTCAGATCCCGCAGAAAGACTGACAGCAGCCCAAGTTCTAGATCATCCATGGATCAAGGAGGATGGAGAAGCACCGGATAAACCACTTGACAACGCTGTACTGAATAGGCTCAAACAGTTCAGAGCAATGAACCAATTCAAGAAAGTTGCTCTAAGGGTCATTGCTGGGTGCCTATCAGAAGAAGAAATCATGGGTTTGAAGGAAATGTTCAGGGGCATGGACACTGACAACAGTGGAACCATCACAATTGAAGAGCTCAAACAAGGGCTTGCAAAGCAAGGGACAAAGCTTACAGAAAACGAAGTTAAGCAGTTAATGGAAGCTGCTGATGCTGATGGTAATGGAACCATAGATTACGACGAGTTCATCACGGCAACGATGCAGATGAACCGAATGAACAGAGAAGAACATCTTTACACAGCTTTCCAATACTTCGATAAAGATAATAGCGGGTTCATTACCACAGAAGAACTAGAACAAGCTCTCCGTGAGTTTAACATGCATGATGGCAGGGACATCAAGGAAATCCTTCAAGAAGTTGATGGAGATAATGATGGGCGAATTAACTATGATGAGTTTGTGTCAATGATGAAGAAAGGAAATCCAGAAGCTGCGACTAGGAAGAGGCGTGATTCATTGCCTTTGCCATAG | 1632 | 0.4528 | MGNCCSQGNAADGPADNTAADDKGETNQQTDNHLNNKNNEDDSAPNPTTPPASSPPPTVTPPPSKSLKPAAMGPVLQRPMEDVRAAYTIGKELGRGQFGVTHLCTDKTSGEQFACKTIAKRKLVSKEDIEDVRREVEIMHHLSRQPNIVELKGAYEDKQSVHLVMELCAGGELFDRIIAKGHYTERAAASLLRTIVQIVHTFHSMGVIHRDLKPENFLLLNKDENAPLKATDFGLSVFFKEGETFKDIVGSAYYIAPEVLKRKYGPEVDIWSVGVMLYILLSGVPPFWAESEHGIFNAILRGHVDFTSDPWPSISPSAKDLVSNMLNSDPAERLTAAQVLDHPWIKEDGEAPDKPLDNAVLNRLKQFRAMNQFKKVALRVIAGCLSEEEIMGLKEMFRGMDTDNSGTITIEELKQGLAKQGTKLTENEVKQLMEAADADGNGTIDYDEFITATMQMNRMNREEHLYTAFQYFDKDNSGFITTEELEQALREFNMHDGRDIKEILQEVDGDNDGRINYDEFVSMMKKGNPEAATRKRRDSLPLP | 543 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Phco11g02401 | 543 | FunFam | Calcium-dependent protein kinase 1 | 353 | 528 | - | - | |
| Phco11g02401 | 543 | SUPERFAMILY | EF-hand | 385 | 525 | IPR011992 | - | |
| Phco11g02401 | 543 | MobiDBLite | consensus disorder prediction | 21 | 47 | - | - | |
| Phco11g02401 | 543 | FunFam | calcium-dependent protein kinase 1 | 173 | 352 | - | - | |
| Phco11g02401 | 543 | Pfam | Protein kinase domain | 87 | 345 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Phco11g02401 | 543 | ProSiteProfiles | EF-hand calcium-binding domain profile. | 388 | 423 | IPR002048 | GO:0005509 | |
| Phco11g02401 | 543 | MobiDBLite | consensus disorder prediction | 48 | 68 | - | - | |
| Phco11g02401 | 543 | Gene3D | Phosphorylase Kinase; domain 1 | 88 | 172 | - | - | |
| Phco11g02401 | 543 | ProSitePatterns | EF-hand calcium-binding domain. | 401 | 413 | IPR018247 | - | |
| Phco11g02401 | 543 | ProSitePatterns | Protein kinases ATP-binding region signature. | 93 | 120 | IPR017441 | GO:0005524 | |
| Phco11g02401 | 543 | FunFam | Calcium-dependent protein kinase 1 | 89 | 172 | - | - | |
| Phco11g02401 | 543 | Gene3D | - | 353 | 529 | - | - | |
| Phco11g02401 | 543 | ProSitePatterns | EF-hand calcium-binding domain. | 437 | 449 | IPR018247 | - | |
| Phco11g02401 | 543 | SMART | serkin_6 | 87 | 345 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Phco11g02401 | 543 | CDD | STKc_CAMK | 87 | 344 | - | - | |
| Phco11g02401 | 543 | ProSitePatterns | EF-hand calcium-binding domain. | 508 | 520 | IPR018247 | - | |
| Phco11g02401 | 543 | SMART | efh_1 | 499 | 527 | IPR002048 | GO:0005509 | |
| Phco11g02401 | 543 | SMART | efh_1 | 464 | 492 | IPR002048 | GO:0005509 | |
| Phco11g02401 | 543 | SMART | efh_1 | 428 | 456 | IPR002048 | GO:0005509 | |
| Phco11g02401 | 543 | SMART | efh_1 | 392 | 420 | IPR002048 | GO:0005509 | |
| Phco11g02401 | 543 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 207 | 219 | IPR008271 | GO:0004672|GO:0006468 | |
| Phco11g02401 | 543 | ProSiteProfiles | Protein kinase domain profile. | 87 | 345 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Phco11g02401 | 543 | Pfam | EF-hand domain pair | 393 | 453 | IPR002048 | GO:0005509 | |
| Phco11g02401 | 543 | Pfam | EF-hand domain pair | 462 | 525 | IPR002048 | GO:0005509 | |
| Phco11g02401 | 543 | MobiDBLite | consensus disorder prediction | 1 | 77 | - | - | |
| Phco11g02401 | 543 | Gene3D | Transferase(Phosphotransferase) domain 1 | 173 | 352 | - | - | |
| Phco11g02401 | 543 | ProSiteProfiles | EF-hand calcium-binding domain profile. | 499 | 530 | IPR002048 | GO:0005509 | |
| Phco11g02401 | 543 | ProSitePatterns | EF-hand calcium-binding domain. | 473 | 485 | IPR018247 | - | |
| Phco11g02401 | 543 | ProSiteProfiles | EF-hand calcium-binding domain profile. | 460 | 495 | IPR002048 | GO:0005509 | |
| Phco11g02401 | 543 | PANTHER | SERINE/THREONINE-PROTEIN KINASE | 82 | 520 | - | - | |
| Phco11g02401 | 543 | ProSiteProfiles | EF-hand calcium-binding domain profile. | 424 | 459 | IPR002048 | GO:0005509 | |
| Phco11g02401 | 543 | SUPERFAMILY | Protein kinase-like (PK-like) | 74 | 373 | IPR011009 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Phco11g02401 | Phco-Chr11 | 29252303 | 29255911 | Dispersed/Wgd |
Transcription factors information