Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g02363 ATGACAAGGAAGAAGGTGGATCTGACATATATAAAGAATGATTCAAAGAGGAAGACAACACTAAGCAAAAGGAAAAATGGTTTAGTGAAGAAGATTAATGAAATCAACATTCTTTGTGGGATTGAAGCATGTGCTATTATTTACACTCCAGATAATCCTCAGCCAGAGGTTTGGCCATCTGAAAGTGGAGTCCAAAGTGTTCTTTCCAGGCTTAGGGGAGTGTCTGAACTGGAGAAAGGCAAGAAAAAGTTGTGTCAAGAGAGCTTTTTGAGGCAGAGGATCATCAAAGCCCAAGCACAACTGAGGAAACTGAGGAATGAAATACGGAAGAAAGAGGTGACCCTTCTCATGTTTCAATACCTCAATGCTAAGAACAATTTTGACAATTCAAGAATGATTGATCTCAATGATATCTCAAACTTGATTGATCAAAACTTGGAGAAAATAGAAAACAATATCTGTATAAGCCAAGCTCAAAAGGTGAAACCTTTTGTTGACAATGGAGGAGAAACCATGAGTTCATTTGTGAATCATGTCAAAGGGTATGAAACCAATGTAGAGGCCATGCAAAATGATGTTTTGTCTATGGACCTTATCAATGGCAACGGTGATGAGATAAAACCATTGGGTGAGGTTGATATTCTAAGTGGTTGA 654 0.3807 MTRKKVDLTYIKNDSKRKTTLSKRKNGLVKKINEINILCGIEACAIIYTPDNPQPEVWPSESGVQSVLSRLRGVSELEKGKKKLCQESFLRQRIIKAQAQLRKLRNEIRKKEVTLLMFQYLNAKNNFDNSRMIDLNDISNLIDQNLEKIENNICISQAQKVKPFVDNGGETMSSFVNHVKGYETNVEAMQNDVLSMDLINGNGDEIKPLGEVDILSG 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g02363 217 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Phco11g02363 217 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Phco11g02363 217 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Phco11g02363 217 CDD MADS_SRF_like 2 82 IPR033897 GO:0000981|GO:0000987|GO:0045944
Phco11g02363 217 FunFam Agamous-like MADS-box protein AGL80 13 98 - -
Phco11g02363 217 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Phco11g02363 217 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 52 IPR002100 GO:0003677|GO:0046983
Phco11g02363 217 SUPERFAMILY SRF-like 2 94 IPR036879 GO:0003677|GO:0046983
Phco11g02363 217 PANTHER MADS BOX PROTEIN 3 153 - -
Phco11g02363 217 Coils Coil 87 114 - -
Phco11g02363 217 Gene3D - 13 96 IPR036879 GO:0003677|GO:0046983
Phco11g02363 217 ProSiteProfiles MADS-box domain profile. 1 52 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g02363 Phco-Chr11 26902492 26903299 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Phco11g02363 SRF-TF 3.3e-16 No_clan