Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g02334 ATGACCGTACGATTTCAATCCAACGGCTCACATCACGCGTGTGTACTTATGTCTCATAGAATCCGTGTGACACGCACTCACTCTCTCTCCTCTCTCTCTCTTTCTGCCCCTCTCGTTCTCTGCAATTCCCGGTGGCGGAGAAACCCTACCCACCGTCCAAACGCCGTCATTTCGCTCTGGAACCTCACTATTCACGTGCGTTTCCGCCACCGCTCGGAAGGGAAAAAGGTTTCCGTCAATCAGGGTTTCTGTTATTCTTCTTCGACCCCGAGATTGGGAAATTTGAGAATCAATTTGTCTTCAGCTCCTAATAATTTACAGTCCTTGCTTAATATAGTTGAAATGGATGTTCAAGTGATAAACGCGGAAGGAAGTGGTCATCAAACAAAGGCAGATAACGGGGATGCAGAGCCAAGTGACAGTGAAGTTAATAATGCTGAAAACTATGGAACTCATGCTGAGGATGGGATTTCTGAGCCATATGTGGGTATGGAATTTGAGACTGTAGATGTTGCTAAGACATTTTATAATGAATATGCCAGACACATGGGTTTTAGCTCTAAAGTTGGCCCATATGGTCACACTAAAGTTGATGGTCACTCTAAAGTTGATGGTGAAAATTATAGGGAGTTTGTATGTGGTAGGGAAGGTTTAAAAAAAGGACTAAATGAAAGTTGCATGGCAATGATTAGGATCGAGCTAAAGGGTCAAAATAAATGGGTGGTAACAAAATTAGTGAAGGAGCACAGTCATTCCCTGTTGAGTTTCAGTAAGGCATACAATAATCAGCCTAGTAAGCATTTTTCTAGTGTTGGAAGGACAATGCCTGAAACTTATCAAGGAGTGGGTCTTGTTCCTAGTGGTGTTATGTATGTATCTATGGATGGGAATCGTGTTTCAAATCAGAATACTCGTGGGATGAAGAATATTCATACCATTCCTGCTGAACGAAGTCACCCAGTTAAAAATTCCTCATTGATGAATTATACTGTTAGGCCTTCTTTGCAAAACCGGACATTGGGGAGGGATGCTCATAATCTGCTGGAGTACTTTAAGAAGATGCAGGCTGAGAATCCTGGTTTCTTCTATGCTATCCAACTTGATGAAGACAATCGAATGTCTAATGTCTTTTGGGCAGATGCAAGATCAAGGACAGCATACAGTTATTACGGTGACACAGTTCATCTTGACACAACATACAAAGTAAATCAATATAGAGTGCCATTTGCTCCTTTTACTGGGGTAAATCATCATGGTCAAATGGTTTTGTTTGGATGTGCGCTCCTTTTGGATGATTCCGAGGCATCTTTTTTATGGCTGTTGAAGACATTTCTGACGGCAATGAATGATTGTCAGCCTGTCTCTATAACTACTGATCAAGATAGAGCCTTGCAGACGGCAGTTTCTCAAGTTCTTCCCCAAGCCCGCCACTGTATTAGCAAGTGGCATATCTTGAGAGAAGGCCAAGAAAGGTTGGCCCATGTATGTCTTGCGCATCCAAATTTTCAGGTTGAACTTTATAATTGTATCAACTTGACAGAAACCATTGATGAGTTTGAATCATTTTGGAATTGTATCCTCGATAAATATGAACTCAGAAGAAATGATTGGCTTCAGTCATTGTATAATGCTCGTGCTCAATGGGTTCCAGCATTCTTCCGTGATTCATTTTTTGCAGCATTATCTCCTACTCAAGGATTTGATGGTTCTTTTTTTGATGGTTATGTCAACCAACAGACGACGTTGCCATTGTTCTTTAGGCAATACGAACGAGCTTTAGAGAGCTGGATTGAGAAGGAAATAGAAGCAGATTTTGAGACACTTTGCACAACACCAGTTTTAAAGACACCTTCACCAATGGAGAAACAGGTTGCTAATCTTTATACAAGAAAAATATTTTCAAAGTTTCAAGATGAGCTTGTTGAAACTTTTGTTTATACTGCAAATAGAATTGAAGGAGATGGATCAAATAGCACATTTAGAGTTGCAAAATTTGAGGACGACCAAAAGGCATACACAGTCTCATTCAACCATTCTGAGTTGAAAGCTAATTGTAGTTGCCAAATGTTTGAGTATTCAGGCATTCTTTGCAGACATATTTTAACAGTTTTCACTGTGACAAATGTACTTACATTACCACCCCATTACATCTTGAAACGTTGGACAAGAAATGCAAAAAACAGTTCCGGATTGGATGAACATACTGGTGAATCACATGCACAGGAGTCTTTGACAGCAAGATATAGCAATCTATGTAAGGAAGCCATCAGATACGCTGAGGAAGGGGCAGTAACTGTGGAAACATATAATGCTGCAATAAGTGGTATTAGAGAAGGTGGAAAGAAGGTCGCTAATGTGAAAAGAAGTGTTCCAAAAGTTTCTCCTCCAAACAATCAGGTCAGTGGGACTGCATATGATGACAGGAAAACTTCCACTCCAACTTCAGATACAACTCCTCTTTTATGGCCACGACAAGATGAGATAACGAGGAGGTTTAATCTTAATGATGCTGGTGCTCCTGTTCAATCGGTTGCTGATCTAAACTTGCCACGGATGGCCCCAGTCTCTCTTTATCGTGATGATGGTCCATCTGAAAACATGGTAGTTCTTCCATGCCTGAAATCAATGACATGGGTAATGGAGAGCAAGAACTCAACTCCAGGGAATAAAGTAGCTGTTATCAATCTTAAGTTGCAAGATTATAGCAGGGTTCCGTCCACAGAATCTGAGGTTAAGTTTCATCTTTCTAGAGTTACTCTGGAACCAATGTTGAAGTCTATGGCTTACATCAGCGAACAGCTCTCAACACCAGCTAATAAGGTTGCAGTAATAAATCTCAAGCTTCAAGATACTGAGACAACTTCTGGTGAGTCAGAAGTAAAGTTTCAGGTGTCCCGGGATACATTGGGTGCTATGCTACGATCAATGGCCTATATCCGTGAGCAGCTTTCTCATGCTGACGATGCACAGTCAGAACCTTTATCTAAAAAGCATAAGAAGTAA 3003 0.4089 MTVRFQSNGSHHACVLMSHRIRVTRTHSLSSLSLSAPLVLCNSRWRRNPTHRPNAVISLWNLTIHVRFRHRSEGKKVSVNQGFCYSSSTPRLGNLRINLSSAPNNLQSLLNIVEMDVQVINAEGSGHQTKADNGDAEPSDSEVNNAENYGTHAEDGISEPYVGMEFETVDVAKTFYNEYARHMGFSSKVGPYGHTKVDGHSKVDGENYREFVCGREGLKKGLNESCMAMIRIELKGQNKWVVTKLVKEHSHSLLSFSKAYNNQPSKHFSSVGRTMPETYQGVGLVPSGVMYVSMDGNRVSNQNTRGMKNIHTIPAERSHPVKNSSLMNYTVRPSLQNRTLGRDAHNLLEYFKKMQAENPGFFYAIQLDEDNRMSNVFWADARSRTAYSYYGDTVHLDTTYKVNQYRVPFAPFTGVNHHGQMVLFGCALLLDDSEASFLWLLKTFLTAMNDCQPVSITTDQDRALQTAVSQVLPQARHCISKWHILREGQERLAHVCLAHPNFQVELYNCINLTETIDEFESFWNCILDKYELRRNDWLQSLYNARAQWVPAFFRDSFFAALSPTQGFDGSFFDGYVNQQTTLPLFFRQYERALESWIEKEIEADFETLCTTPVLKTPSPMEKQVANLYTRKIFSKFQDELVETFVYTANRIEGDGSNSTFRVAKFEDDQKAYTVSFNHSELKANCSCQMFEYSGILCRHILTVFTVTNVLTLPPHYILKRWTRNAKNSSGLDEHTGESHAQESLTARYSNLCKEAIRYAEEGAVTVETYNAAISGIREGGKKVANVKRSVPKVSPPNNQVSGTAYDDRKTSTPTSDTTPLLWPRQDEITRRFNLNDAGAPVQSVADLNLPRMAPVSLYRDDGPSENMVVLPCLKSMTWVMESKNSTPGNKVAVINLKLQDYSRVPSTESEVKFHLSRVTLEPMLKSMAYISEQLSTPANKVAVINLKLQDTETTSGESEVKFQVSRDTLGAMLRSMAYIREQLSHADDAQSEPLSKKHKK 1000
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g02334 1000 MobiDBLite consensus disorder prediction 789 820 - -
Phco11g02334 1000 Pfam FAR1 DNA-binding domain 174 254 IPR004330 -
Phco11g02334 1000 Pfam SWIM zinc finger 678 706 IPR007527 GO:0008270
Phco11g02334 1000 MobiDBLite consensus disorder prediction 125 154 - -
Phco11g02334 1000 SMART 26again6 683 710 IPR006564 GO:0008270
Phco11g02334 1000 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 148 785 IPR031052 GO:0006355
Phco11g02334 1000 MobiDBLite consensus disorder prediction 791 820 - -
Phco11g02334 1000 Pfam MULE transposase domain 394 486 IPR018289 -
Phco11g02334 1000 ProSiteProfiles Zinc finger SWIM-type profile. 672 708 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g02334 Phco-Chr11 24762366 24774129 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Phco11g02334 MULE 8.7e-24 CL0219
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g02334 11 24762366 24774129 Phco3g00910 3 7645518 7649735 PCT