Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g02281 ATGGATCGCAAAGATAATGGTAAACGACCAGTTTCTGATTATGGGTTCGAATCTTGCGCCAAAGAGAAGATGAAGAGATCCGTTTTGGGTTCTTGCAAAGCTGAACTTGAATCAGTGGCGGTTGAGGAAAACCCTTCCCCAAAACTCAGTACGTGTGATATCTGCTTCAGGAGTTTCAGCTGCGGCAAGGCTTTAGGTGGACACAGAAGATCCCACTTTATGAAGCAGCAGCAAAAGAAGGTAATGACCCGTTTAACTGATAATCACTCGTCAAAACCTGGTGATAGTAACATTAGGGTTATCTGTGATTTTGATGATGATGGCGGCAAACGCATTTGCTGTATTTGCAAGAAGGAATTTCCTACCAAGAATGCTTTGTTTGGGCACATGAGGTCTCATCCAGAGAGACCATGGAGGGGTGTGTCCCCTCCTACTCAAAAGAACTCATCTTCTCCTTCTTCTTCTTCTTACTACTGTTCTTCTTCTTCTTCTTCCCTCAATTCTGATTCTATGGAGAAAAACAAAGAGGATCATGATGTTGATGATGGCTGTGATGGGGGTGACGGGGTGATCGCATCTCATGAAAATCACACAAATCTCGTGGATCTTTTAATGTGTACTTCACCCAGCTGGCTCAGGAAAGATATAAGAGGCAGAAATTCTATTGGTGGGTATCAGGCTGCTGAAACTCTTTTTTACATGAGTTCTTATTCCAAGTACTTTTGCAGTGAACCTAATAGGGTTTTCCCCAACAAGGATCAAGTGCTGCCAAAGAGTGCCCCAGCCCTAATCAAGCAGCGCAAAAGAAAGATTTGTCAATCCTCGTCAAGTAAGAAAGATATGGTGAAGAAGATAAAATTTTTATTTAAAGGTGAATTGAACTTGGGAAACACATCCAATGGGGTTGGTGAATGTGATGGTGAGGGTAATGAACTGAACAGGTCGAAGGGTTTATCTGAATCTGGGGTTGAGAATAACCATGATGATGAGAAGAAGGGTATGGCTGAGAGTTTTGATGATTTGAATGCTGAAATGGTTACCCCAACTAATAAGGTGCAAGATCATGTTGGTCCTTCTGAGGTGAAGAAGAATACGGATAAGAAAGGGAAAAACAGTAAGAAGACGGTACTGAATTCAAGGACAAAGGACTCGGAATCTGAGAAAGCGAGTCAAGAGAAAGCAGATTGGTATAAATGTGCTGCATGTGGAAAAAGCTTCAAAACTTTCCAAGGCCTAGGAGGACACAGGTCAGTCCACAAAGAGAAGAACACGGTCAGCATTGATGAGCCAAACCCCTTGGAAGCTGTTGCTGAACAAAACAACTCTAGCAGCTCCTGCAACATGAGCAAGATGGAGGAGCCATTATTTAATGAAGCAACCATACCAGATCAGCCATGCCAATCTTCAGGTGTCAAGAAACTGAATTTCGATCTAAATGAGCTACCTTGTGCTATGGATGAGGACTAG 1467 0.4274 MDRKDNGKRPVSDYGFESCAKEKMKRSVLGSCKAELESVAVEENPSPKLSTCDICFRSFSCGKALGGHRRSHFMKQQQKKVMTRLTDNHSSKPGDSNIRVICDFDDDGGKRICCICKKEFPTKNALFGHMRSHPERPWRGVSPPTQKNSSSPSSSSYYCSSSSSSLNSDSMEKNKEDHDVDDGCDGGDGVIASHENHTNLVDLLMCTSPSWLRKDIRGRNSIGGYQAAETLFYMSSYSKYFCSEPNRVFPNKDQVLPKSAPALIKQRKRKICQSSSSKKDMVKKIKFLFKGELNLGNTSNGVGECDGEGNELNRSKGLSESGVENNHDDEKKGMAESFDDLNAEMVTPTNKVQDHVGPSEVKKNTDKKGKNSKKTVLNSRTKDSESEKASQEKADWYKCAACGKSFKTFQGLGGHRSVHKEKNTVSIDEPNPLEAVAEQNNSSSSCNMSKMEEPLFNEATIPDQPCQSSGVKKLNFDLNELPCAMDED 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g02281 488 Pfam C2H2-type zinc finger 397 421 - -
Phco11g02281 488 Pfam C2H2-type zinc finger 112 135 - -
Phco11g02281 488 Pfam C2H2-type zinc finger 52 72 - -
Phco11g02281 488 SUPERFAMILY beta-beta-alpha zinc fingers 395 423 IPR036236 -
Phco11g02281 488 ProSitePatterns Zinc finger C2H2 type domain signature. 113 133 IPR013087 -
Phco11g02281 488 ProSiteProfiles Zinc finger C2H2 type domain profile. 397 424 IPR013087 -
Phco11g02281 488 MobiDBLite consensus disorder prediction 127 188 - -
Phco11g02281 488 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 38 485 IPR044653 GO:0003700
Phco11g02281 488 MobiDBLite consensus disorder prediction 142 169 - -
Phco11g02281 488 SMART c2h2final6 50 72 IPR013087 -
Phco11g02281 488 SMART c2h2final6 111 133 IPR013087 -
Phco11g02281 488 SMART c2h2final6 397 419 IPR013087 -
Phco11g02281 488 MobiDBLite consensus disorder prediction 412 448 - -
Phco11g02281 488 ProSitePatterns Zinc finger C2H2 type domain signature. 399 419 IPR013087 -
Phco11g02281 488 ProSitePatterns Zinc finger C2H2 type domain signature. 52 72 IPR013087 -
Phco11g02281 488 SUPERFAMILY beta-beta-alpha zinc fingers 49 133 IPR036236 -
Phco11g02281 488 MobiDBLite consensus disorder prediction 348 393 - -
Phco11g02281 488 Gene3D Classic Zinc Finger 50 133 - -
Phco11g02281 488 MobiDBLite consensus disorder prediction 170 185 - -
Phco11g02281 488 ProSiteProfiles Zinc finger C2H2 type domain profile. 50 77 IPR013087 -
Phco11g02281 488 MobiDBLite consensus disorder prediction 356 393 - -
Phco11g02281 488 MobiDBLite consensus disorder prediction 299 333 - -
Phco11g02281 488 ProSiteProfiles Zinc finger C2H2 type domain profile. 111 133 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g02281 Phco-Chr11 21521274 21522740 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Phco11g02281 zf-C2H2_6 7.1e-07 CL0361