Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g02277 ATGGGGTGTGGCTGTGTTCAGTGTTCGATTCAAGAATGTGATTCTGTCTCAGGAGTAGCAGCGTGTTTTTTAACTCTCTACTTTTTCATATTGACAGCCATGAGTAGCGTGACTAGTGGGGGTGATAATCGGAAGATATACAGAGGTTGTCGGTCATCATCATTAGATGAAGAAGGTGGAGTTGGAGGTAACATGGGAGGAGAAGTTCCTCTGAAGAAAGGTCCATGGACTGCAGCAGAGGATGCAATTTTGTTAGAATATGTTAATAAGCACGGACAAGGCAATTGGAATGCAGTCCAAAAGTATTCAGGACTTGCCCGTTGTGGGAAAAGCTGCCGTCTACGATGGGCAAATCACTTGAGACCGGATCTGAAAAAAGGTGCATTTACCCAAGAGGAAGAGAACCGAATCCTTGAGCTCCACGCAAAAATGGGGAACAAATGGGCTCGTATGGCTGCTGAGTTGCCTGGGCGTACGGATAATGAAATCAAGAACTACTGGAACACAAGAATCAAAAGAATGCAACGAGCCGGCTTACCTATCTACCCTCCAGAATTATATGAGCGGATACTTAATGGAAATCAAGAAAGTCAAAATATTTGTCCCTTGACTGTTGAAGCCTCCCAGCATGATAATCTCTTGCAAACGGACCAATTTGATATACAGGATATGGATTTCAAGAATGTCAAATTTCATCATGGTCCATCACAGGTACCAGCAATTCTTGATATACCTGAAAACTTGTTTGAGCAATGTTCGGATTCATCTCATTTGTTCCCAACAATTTATCCTTCAAAACGTCTGCGGGAGTCAGAAATTCTATGCAATAGTTTTGGTAGTTGTACAGCTAATGCTCTTCAACTATTTGATCAGTATGGCAATTATATTGGTGAGAAAATTTATGACCATCCTAGGTTCTATCCTCCTTTTGAATCCGTTCATAACACCAGTAATCAGTTTCATGGTGGTAACATAAATGGCAGCCATGCCATGTTAAATGGCAATGTTTCTTCTTCTGTGCCCTTATTTGGGGCTAGGAAGTTGGAGCTCCCTTCACTCCAATATACAGAAACTCAACATGGTAGCTGGGTCACACATGGGTCCCCGCTACCTTCACTTGAGTCTGTAGATACATTGATTCAGTCTCCTCCAGTTGAGTCTATTCCATCAGATCTCATTTCTCCACAAAGCAGTGGTTTGCTGGAAGCAATAGTCTACAACTCGAAGAGCATGAAAGACTCGAATACTGATTTATTTTTTCCAGTCATAACCGGTGCATCCAATGAAGCAGCTGGGAGTTCAACCTTGAATCATCCCTACAAGACAGAATGGGAAGAGCAAGGGGAGTCAAACTCCCCCTTAGGTCAATCTGCTGCTTCAGTTATGACTGACTATACTCCTATAAGCTCAGTAGATGGACCCCAATCAATCGAAACCACTCAAGATCATGATGATAAGCTCGAAGCACTCACCTGGTTCCCAAATAGTTCCAGGAAGAAAGAAAAATGGGAACAGATTGATTTTTCGCAACGTCCTGATGCTTTATTTGACTTAGCTTGGTTTGGAAGTAACATTGAATGTGGAATTAGTCAATCTGATCTAAAAGATGCTCTAAGTGCACTTCTTGGTGAAGATTACAAGTCTAACTTTGGTGAAGATAGCAAGGGAAAGCAGTAG 1677 0.4216 MGCGCVQCSIQECDSVSGVAACFLTLYFFILTAMSSVTSGGDNRKIYRGCRSSSLDEEGGVGGNMGGEVPLKKGPWTAAEDAILLEYVNKHGQGNWNAVQKYSGLARCGKSCRLRWANHLRPDLKKGAFTQEEENRILELHAKMGNKWARMAAELPGRTDNEIKNYWNTRIKRMQRAGLPIYPPELYERILNGNQESQNICPLTVEASQHDNLLQTDQFDIQDMDFKNVKFHHGPSQVPAILDIPENLFEQCSDSSHLFPTIYPSKRLRESEILCNSFGSCTANALQLFDQYGNYIGEKIYDHPRFYPPFESVHNTSNQFHGGNINGSHAMLNGNVSSSVPLFGARKLELPSLQYTETQHGSWVTHGSPLPSLESVDTLIQSPPVESIPSDLISPQSSGLLEAIVYNSKSMKDSNTDLFFPVITGASNEAAGSSTLNHPYKTEWEEQGESNSPLGQSAASVMTDYTPISSVDGPQSIETTQDHDDKLEALTWFPNSSRKKEKWEQIDFSQRPDALFDLAWFGSNIECGISQSDLKDALSALLGEDYKSNFGEDSKGKQ 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g02277 558 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 121 175 IPR017930 -
Phco11g02277 558 FunFam MYB-related transcription factor 72 125 - -
Phco11g02277 558 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 68 120 IPR017930 -
Phco11g02277 558 SUPERFAMILY Homeodomain-like 70 167 IPR009057 -
Phco11g02277 558 SMART sant 125 173 IPR001005 -
Phco11g02277 558 SMART sant 72 122 IPR001005 -
Phco11g02277 558 Gene3D - 72 125 - -
Phco11g02277 558 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 59 525 - -
Phco11g02277 558 CDD SANT 75 120 IPR001005 -
Phco11g02277 558 Gene3D - 128 200 - -
Phco11g02277 558 CDD SANT 128 169 IPR001005 -
Phco11g02277 558 Pfam Myb-like DNA-binding domain 126 169 IPR001005 -
Phco11g02277 558 Pfam Myb-like DNA-binding domain 73 120 IPR001005 -
Phco11g02277 558 ProSiteProfiles Myb-like domain profile. 121 171 IPR001005 -
Phco11g02277 558 ProSiteProfiles Myb-like domain profile. 68 120 IPR001005 -
Phco11g02277 558 FunFam Transcription factor GAMYB 128 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g02277 Phco-Chr11 21427400 21432766 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Phco11g02277 Myb_DNA-bind_6 7.2e-15 CL0123