Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Phco11g02266 | ATGAATGGGCAGAAAATTAAGCGTCGAGTGGGTAAATATGAGGTAGGGAGGACCATTGGGGAGGGAACATTTGCAAAGGTGAAATTTGCTAGGAACTCTGAGACTGGGGAGCCAGTGGCTCTTAAGATTCTTGACAAGGAGAAGGTTCTCAAGTATATGCTGGTTGAGCAGATCCAGAGAGAAATAGCCACAATGAAGTTGATCAAGCATCCAAATGTTGTTCAACTACATGAGGTCATGGGGAGCAAGACAAAAATATACATTATTTTAGAGTTTGTGACTGGGGGAGAGCTTTTTCATAAAATTTTAAACAGTGGACGGATGAGAGAAAAGGAAGCACGAATACATTTCCAGCAGCTTATAAATGCTGTTGACTATTGCCATAGCAGGGGTGTCTACCACAGAGACCTGAAACTAGAGAACTTACTATTAGATGCTTCTGGGAACCTTAAAATTTCTGATTTTGGATTGAGTGCACTTTCCCAACAAGTCAGGGATGATGGACTGCTCCATACAACATGTGGAACTCCAAATTATGTTGCTCCTGAGGTCCTTAATGATGGAGGCTATGATGGGGCAGCTGCAGATTTGTGGTCATGTGGTGTGATTCTCTTTGTATTGCTTGCAGGTTACTTGCCTTTTGATGACACTAATCTTTTGAACCTGTATAAAAAAATTTCAGCTGCTGAATTCACTTGCCCCCCTTGGCTTTCTTTTAGTGCCAGGAAATTGATAACTAGAATCTTGAATCCCAACCCTGTGACTCGTATCACTGTACAGGAGATTTTGAGTGATGAATGGTTTAAAGAAGACTATAAACTTCCGGTTTTTGAGGAGACAAAGGAGAGCAACACTGATGACATTGAGGCCATCTTTAAAGACTATGAAGTGCACAATGTAAGAGAGAAGGAAGATCAGCCAACACCTATGAATGCATTTGAATTGATATCCTTGTCCAAAGGGCTGAACCTAGAAAACTTGTTTGACATAGACCAGCCCCACAGGCATGTCTCATTGGATATTCAGGGATTTAAAAGAGAAATAAGGTTCACTTCAAAATGCCCTGCCAATGAGATTATCAACAAGATTGAAGAAGCTGCAAAACCTCTTGGTTTTGATGTGCAGAAGAAAAATTTCAAGATGAAGCTTAAAAATGTGAAAGCTGGAAGGAAGGGAAACCTCAATGTTGCCACAGAGATATTTCAAGTGGCACCTTTTCTTCACGTGGTTAAGATTAATAAAGCAAAAGGTGATACATTGGAGTTCCTCAAGTTCTACAACAAGCTTTCAACATGCTTGGAGGATGTTGTTTGGAAAACTGAAGATGACATGGAAAATGCAAAGGGAAATTGA | 1353 | 0.4043 | MNGQKIKRRVGKYEVGRTIGEGTFAKVKFARNSETGEPVALKILDKEKVLKYMLVEQIQREIATMKLIKHPNVVQLHEVMGSKTKIYIILEFVTGGELFHKILNSGRMREKEARIHFQQLINAVDYCHSRGVYHRDLKLENLLLDASGNLKISDFGLSALSQQVRDDGLLHTTCGTPNYVAPEVLNDGGYDGAAADLWSCGVILFVLLAGYLPFDDTNLLNLYKKISAAEFTCPPWLSFSARKLITRILNPNPVTRITVQEILSDEWFKEDYKLPVFEETKESNTDDIEAIFKDYEVHNVREKEDQPTPMNAFELISLSKGLNLENLFDIDQPHRHVSLDIQGFKREIRFTSKCPANEIINKIEEAAKPLGFDVQKKNFKMKLKNVKAGRKGNLNVATEIFQVAPFLHVVKINKAKGDTLEFLKFYNKLSTCLEDVVWKTEDDMENAKGN | 450 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Phco11g02266 | 450 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 132 | 144 | IPR008271 | GO:0004672|GO:0006468 | |
| Phco11g02266 | 450 | PANTHER | CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED | 6 | 424 | - | - | |
| Phco11g02266 | 450 | FunFam | Non-specific serine/threonine protein kinase | 6 | 308 | - | - | |
| Phco11g02266 | 450 | Gene3D | Kinase associated domain 1, KA1 | 304 | 439 | - | - | |
| Phco11g02266 | 450 | CDD | CIPK_C | 311 | 430 | - | - | |
| Phco11g02266 | 450 | ProSiteProfiles | NAF domain profile. | 305 | 329 | IPR018451 | GO:0007165 | |
| Phco11g02266 | 450 | Gene3D | Transferase(Phosphotransferase) domain 1 | 93 | 275 | - | - | |
| Phco11g02266 | 450 | FunFam | Non-specific serine/threonine protein kinase | 4 | 92 | - | - | |
| Phco11g02266 | 450 | CDD | STKc_SnRK3 | 12 | 267 | - | - | |
| Phco11g02266 | 450 | Pfam | NAF domain | 307 | 376 | IPR004041 | GO:0007165 | |
| Phco11g02266 | 450 | FunFam | Non-specific serine/threonine protein kinase | 304 | 439 | - | - | |
| Phco11g02266 | 450 | ProSiteProfiles | Protein kinase domain profile. | 13 | 268 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Phco11g02266 | 450 | SMART | serkin_6 | 13 | 268 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Phco11g02266 | 450 | SUPERFAMILY | Protein kinase-like (PK-like) | 9 | 286 | IPR011009 | - | |
| Phco11g02266 | 450 | Gene3D | Phosphorylase Kinase; domain 1 | 4 | 92 | - | - | |
| Phco11g02266 | 450 | Pfam | Protein kinase domain | 13 | 268 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Phco11g02266 | 450 | ProSitePatterns | Protein kinases ATP-binding region signature. | 19 | 42 | IPR017441 | GO:0005524 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Phco11g02266 | Phco-Chr11 | 21105282 | 21110536 | Dispersed/Wgd |
Transcription factors information