Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g02227 ATGGTGCCCCATTTTTTCATTTCAAGATTAATTGCATCTTCATCATTCACAGGCTACAGGAGTACCCATCTTCTATTGGGTTCTCTACTGCCATGCAAACACACTGCTTCACTTTTTTTCTTCAATTCTTTCACTTCACGCACTTCCTCTGATTCCGAATCAGATGAAAACCATCACAAAGGTGACACCTTTACTGTATCTTACCTCATCAACTCATGTGGGGTGTCCCTAACTCTGGCTAGGGAACTCTCCAACAGGGTCAATTTGAAAACCCCAGATGGCCCAGATGCTGTCATCGATATCCTCAGCAACTATGGGTTCTCAAAATCCCAGCTTGCAAAGCTTGTGGTTAGACATCCTTCCGTGCTATTTGCAAAAGTAGAGGATACCCTTTTGCCTAAACTCAACTTCTTTCGTTCTATTGGGTTTTCCAACACTGACATACCGAAGATCCTGATTGCGAACCATGGTATCTTGAAGAGGAGCTTGGAAAAATGCATCATCCCTCGCTATGAGATCCTAAAGACTGTAGTTCGTAATGATCGGGAAGTTGTTAGAGCTATTAAAAATGCCCCACTAGGTTTCGTGTATGGTGACTTAATGAATAAGTTGGTTCCAAACATTAACATTTTGAGGCAATGTGGTGTGCCTCAGGCTTCCATCTCTCACCTGGTGACCAATTCTCTGTCTGCAGCATATGTGGAGCATTCCAGGTTTGTGGAAGCTATCAAGACAGTTAAGGAAATTGGATTTAGTCCTTTGAAAATGGACTTTGTTGTTGCTATTCACGTGCTTGTAACTATGAGAAAAGAAGTGTGGGATTCAAGATTTGAGGTTTATGAAAGGTGGGGCTGGAACCGGGAAATGGCACTTCGAGCATTTAGGAAGTTTCCCAGTTTTATGAAGTTTTCAGGGGAGACATTTTCCAGAAAGATGAATTTCCTAGTGAAAGATATGGGTTGCCCATCAGAAGCTATTGCTGAATACCCTCTAGTAGTAGCGTACAGCTTGGAGAAGAGGATTGTTCCTAGGTTCTCTGTAATTAAAATCTTGAAATCAAAAGGTCTTCTTGAGAAAAACGTGCCCTTTAGTTCCATTATTTGCACAAGTGAGGAAAAGTTCTTGGAGAAATTTGTCGTCAGTTTTCAGAATGTTTTGCCCCTCTTACCAGACCTCTACAGAGGTTTCATCAATCAGTCAAATGTAGTGTAG 1212 0.4167 MVPHFFISRLIASSSFTGYRSTHLLLGSLLPCKHTASLFFFNSFTSRTSSDSESDENHHKGDTFTVSYLINSCGVSLTLARELSNRVNLKTPDGPDAVIDILSNYGFSKSQLAKLVVRHPSVLFAKVEDTLLPKLNFFRSIGFSNTDIPKILIANHGILKRSLEKCIIPRYEILKTVVRNDREVVRAIKNAPLGFVYGDLMNKLVPNINILRQCGVPQASISHLVTNSLSAAYVEHSRFVEAIKTVKEIGFSPLKMDFVVAIHVLVTMRKEVWDSRFEVYERWGWNREMALRAFRKFPSFMKFSGETFSRKMNFLVKDMGCPSEAIAEYPLVVAYSLEKRIVPRFSVIKILKSKGLLEKNVPFSSIICTSEEKFLEKFVVSFQNVLPLLPDLYRGFINQSNVV 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g02227 403 Gene3D Transcription termination factor 3, mitochondrial 69 197 IPR038538 -
Phco11g02227 403 Gene3D Transcription termination factor 3, mitochondrial 198 385 IPR038538 -
Phco11g02227 403 FunFam Mitochondrial transcription termination factor-like 163 386 - -
Phco11g02227 403 Pfam mTERF 269 375 IPR003690 GO:0003690|GO:0006355
Phco11g02227 403 Pfam mTERF 99 306 IPR003690 GO:0003690|GO:0006355
Phco11g02227 403 SMART mt_12 256 286 IPR003690 GO:0003690|GO:0006355
Phco11g02227 403 SMART mt_12 149 180 IPR003690 GO:0003690|GO:0006355
Phco11g02227 403 SMART mt_12 323 357 IPR003690 GO:0003690|GO:0006355
Phco11g02227 403 SMART mt_12 185 217 IPR003690 GO:0003690|GO:0006355
Phco11g02227 403 SMART mt_12 291 322 IPR003690 GO:0003690|GO:0006355
Phco11g02227 403 SMART mt_12 113 144 IPR003690 GO:0003690|GO:0006355
Phco11g02227 403 PANTHER CGI-12 PROTEIN-RELATED 63 380 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g02227 Phco-Chr11 20196528 20197739 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Phco11g02227 mTERF 2.5e-22 No_clan