Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g02226 ATGGTTCCTAATTTTCTGATTCGAACGTTAAGTGCATCATTCACGAACCACAAAAGTACCCAAATTCAATTGGGTTCTCTGCTGCAACACAAACCCACTGCTTTCCTTTTGTACTTTAAGTACTTCACTTCAACCACCTCTTTTGATTCTGAATCAGATGGAAATCACCACAAAGATGACACCTTTACCGTGTCTTATCTCATTAACTCATGCGGGCTGTCCACAAAATTGGCCAGGGAACTCTCCAACAGGGTTAATTTGAAGAGCCCAGATGGCCCTAATGCTGTTATCGATCTTCTCAGCAATTATGGGTTCTCCAAATCCCAGCTTGCAAAAATTGTGGAGAATCATCCCAAATTGCTTTTGGCAAATGCTGAGAATAACCTTTTGCCGAAACTCAAGTTCTTCCGTTCTATTGGGGTTTCCGACACTGACTTGCCTAAGATCCTAATTAGAGGCCGTCATATCTTGTCCAGAAGCCTGGAAAAATGCCTTATTCCGCGTTATGAGATCCTAAGGAGTGCACTTCTTGACGATGAGGAAGTTGTTAGGTCTTTGAAAACTTCCTCATTTGGTTTTTCATTTAGTGACACGAAAAAAAACTTGGTTCCAAACATTGAGGTTTTGAGGAAATGTGGTGTGCCCCAAGCTTCCATCTCTTACCTGATGATACATGCTGGGACTCTGGCCTACCGAGAACATTCCAAATTTGTGGAAGTTGTCAACACTGCTAAGGAAATTGGGTTTAATCCTTTGAGAGTAAATTTTATTGTGGCTATTGAAGTGCTTAGTAAGAGGAAGGCAGTGTGGGAATCAAGGTTTGAGATTTATGAGAGGTGGGGATGGGACCGGGAAATGGCTCTTCGAGTAATTCGGAAGTTTCCTGCTGTTATAAAGTTGTCAGAGGAGACGTTTACCAAAAAAATGAATTTCCTTGTGAAGGAGATGGGTTGTCCATCAGAAGCTATTGCTGAATATCCTGTGGTCGTGGCCTACAACTTGGAGAAGAGGATTATCCCTAGATTTTCGGTTATCAAAATCTTGAAATCAAAGGGTCTGCTTGAGAACAGTTTTCCCTTTGGTTCCTTTATTTGCATAAATGAAAATACTTTTTTGGAGAAATTTGTTGTCAATTTTCAGAAAGATTTGCCTATTGTGCGAGATGTCTACAGCAGTTTGATCAAACAACACAGTGTAATATAA 1203 0.4065 MVPNFLIRTLSASFTNHKSTQIQLGSLLQHKPTAFLLYFKYFTSTTSFDSESDGNHHKDDTFTVSYLINSCGLSTKLARELSNRVNLKSPDGPNAVIDLLSNYGFSKSQLAKIVENHPKLLLANAENNLLPKLKFFRSIGVSDTDLPKILIRGRHILSRSLEKCLIPRYEILRSALLDDEEVVRSLKTSSFGFSFSDTKKNLVPNIEVLRKCGVPQASISYLMIHAGTLAYREHSKFVEVVNTAKEIGFNPLRVNFIVAIEVLSKRKAVWESRFEIYERWGWDREMALRVIRKFPAVIKLSEETFTKKMNFLVKEMGCPSEAIAEYPVVVAYNLEKRIIPRFSVIKILKSKGLLENSFPFGSFICINENTFLEKFVVNFQKDLPIVRDVYSSLIKQHSVI 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g02226 400 FunFam Mitochondrial transcription termination factor-like 161 383 - -
Phco11g02226 400 Pfam mTERF 267 371 IPR003690 GO:0003690|GO:0006355
Phco11g02226 400 Pfam mTERF 97 256 IPR003690 GO:0003690|GO:0006355
Phco11g02226 400 PANTHER CGI-12 PROTEIN-RELATED 62 377 IPR003690 GO:0003690|GO:0006355
Phco11g02226 400 Gene3D Transcription termination factor 3, mitochondrial 163 383 IPR038538 -
Phco11g02226 400 SMART mt_12 288 319 IPR003690 GO:0003690|GO:0006355
Phco11g02226 400 SMART mt_12 320 354 IPR003690 GO:0003690|GO:0006355
Phco11g02226 400 SMART mt_12 147 178 IPR003690 GO:0003690|GO:0006355
Phco11g02226 400 SMART mt_12 111 142 IPR003690 GO:0003690|GO:0006355
Phco11g02226 400 SMART mt_12 183 215 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g02226 Phco-Chr11 20187430 20188632 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Phco11g02226 mTERF 7.4e-23 No_clan