Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g02223 ATGCACCATTTTCTTAGTTATAGGTTAACAACTAGAACCCCCCACTTTGGTTTTCTTTGTCACAATGCTGTTCATTTCTTCATTTCAAGAACTCTATCTGTATCAAACACCAATCACCAAAAAAGTTACACCTTTAACGTATATAACATCATCAACTCATCTGGGTTGTCCTCAGAAAAAGCCCTGAAACTCACAAAAAGGTTGGAATTGAAAAAACCAGATGGGGCAAATGCTGTAATTGATCTTCTCAGGAACTACGGGTTTTCTGATACCCAGTTACATAGCCTTGTAAAGAAAATCCCTTCTGTGCTTTTGTCAAAACCTGAAAAGACCCTTTTGCCAAAACTCAAGTTCTTCCATTCTATTGGGTTTTCAACCACTGACCTTCCTAGATTCCTCATTGGAAACACTTCATTTTTGGGATCTAGCTTGGACAAAACTATTATCCCCCGTTACCAGATCATCAAGAGACTAGTTCACAGTGATAAGGAAGTGGTTTCCACCTTGAAGCATGATAGGTGGCACGTCAACCGTGGAAATTTTGTGAGTTCAGTTCAAAATGTTGGGACTTTGAGACAGCTTGGGGTGCCTCAAAATTCCATTTCCTTCCTTGTAACCAATTTTCCAAGTGTAACATTCATGAATCATTCGAGATTTGTTGAGGCTGTGGAGAAAGTGAAGGAAATGAGGTTTGATCCTTCGAAATTAAATTTTGTGGTGGCACTTCAAGTATTTGCAAAGATGAATGAAGCAATGTGGAAATCAAAATTAGAGGCTTTTGAGAGGTGGGGCTGGTCCACTGATATCTGTCTTTTAGCTTTCAAAAAGCATCCTCAGTTTCTGATGTTGTCAGAGAATAAGATTATGAAAATATTGAGCTTCTTGATGAAAGATATGGGTTTGCCAGTAGAACACATTGCTGGATGCCCTGAAATTCTTAAATGCAACTTGGAGAAGACAGTTATCCCTAGATGTGCAGTTGTTAAGCTTTTGAAGTTAAGGGGTTTGATAAAGAGAGATTTGAAAATAAGTACCTTCATCAAGATTAGTGAGAAAGTGTTTTTGGAGAGATATGTGACCCGATTTCAGAAAAATGAACCACTGCTATTAGATGCGTACAAAGGAATTGGGCCTCCAGTGTTTTGA 1146 0.3848 MHHFLSYRLTTRTPHFGFLCHNAVHFFISRTLSVSNTNHQKSYTFNVYNIINSSGLSSEKALKLTKRLELKKPDGANAVIDLLRNYGFSDTQLHSLVKKIPSVLLSKPEKTLLPKLKFFHSIGFSTTDLPRFLIGNTSFLGSSLDKTIIPRYQIIKRLVHSDKEVVSTLKHDRWHVNRGNFVSSVQNVGTLRQLGVPQNSISFLVTNFPSVTFMNHSRFVEAVEKVKEMRFDPSKLNFVVALQVFAKMNEAMWKSKLEAFERWGWSTDICLLAFKKHPQFLMLSENKIMKILSFLMKDMGLPVEHIAGCPEILKCNLEKTVIPRCAVVKLLKLRGLIKRDLKISTFIKISEKVFLERYVTRFQKNEPLLLDAYKGIGPPVF 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g02223 381 Pfam mTERF 248 355 IPR003690 GO:0003690|GO:0006355
Phco11g02223 381 Pfam mTERF 80 295 IPR003690 GO:0003690|GO:0006355
Phco11g02223 381 SMART mt_12 303 337 IPR003690 GO:0003690|GO:0006355
Phco11g02223 381 SMART mt_12 271 302 IPR003690 GO:0003690|GO:0006355
Phco11g02223 381 SMART mt_12 94 125 IPR003690 GO:0003690|GO:0006355
Phco11g02223 381 SMART mt_12 130 161 IPR003690 GO:0003690|GO:0006355
Phco11g02223 381 SMART mt_12 202 232 IPR003690 GO:0003690|GO:0006355
Phco11g02223 381 PANTHER CGI-12 PROTEIN-RELATED 48 361 IPR003690 GO:0003690|GO:0006355
Phco11g02223 381 Gene3D Transcription termination factor 3, mitochondrial 180 365 IPR038538 -
Phco11g02223 381 Gene3D Transcription termination factor 3, mitochondrial 51 179 IPR038538 -
Phco11g02223 381 FunFam Mitochondrial transcription termination factor-like 144 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g02223 Phco-Chr11 20121346 20123923 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Phco11g02223 mTERF 4.6e-26 No_clan