Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g02222 ATGCACCATTTTCTGCTTGCTAGATTAACAACTAGGACCCCCCACTTTGGTGTTCTTTGCCACAATGCCATTCTTTTCTTAAATTCACGTACTTTATCTGTATCAAACACAAAGTATCACAAAGGTGGCACCTTTAATTCATTTAGCATCATCAATTCATGTGGGTTGTCCCCTAAAACGGCCCTGGAATTCTCCAAAAGGTTGGAATTGAAAAACCCAGATGGGGCAAATGCTGTAATTGATCTTCTCAGGAGCTATGGGTTCTCGAAGACCCAGCTATGTAGCCTTGTAAAGAAACTCCCTTCCGTGCTTTTGTCAAATCCAGACAAGACCCTTTTGCCAAAACTCAAGTTCTTTCGTTCTATTGGGTTTTCATCCACTGACCTTCCTACATTCCTCGTTAGGAAACCTACATTTCTGAAATCAAGCTTGGAGAAAACCATTCGCCCTTGTTATGTGGTAATCAGAAGTCTAGTTCGCTGTGATAAGGAAGTGGTTTCCACTTTAAAGCATGGGCTGTGGCACTTTAACAGCAGAAATGTGGTGAATAATTCACTTCCAAACATAGAGGCTCTGAGACAGCTTGGCCTGCCTCAAGGTTCCATTTCTCTCCTGGTAGCCAATTTTCCTAGTGTGACATTTATGAAGCATGCAGGATTTGTTGAGGCTGTGGAGAAAGTGAAGGAAATGGGGTTTGATCCTTTGAAAACAAGTTTTGTTATGGCACTTAAAGCTTTTGCAGATATAAGTGAAGCATCATGGAAATCGAAGTTAGAGGTTTTGGAGAAATGTGGCTGGTCCAGTGATATCTCTCTTTTAGCTTTCAAAAAGCATCCCCAGTTTATGGTCTCATCAGAAAGCAAGATTCTTAAAATAATGAGCTTTTTGACGAAGGATGTGGGTTTGGCCCCTGAAGACATCGCTAGATGCCCTGCGCTCCTTAAATGCAACTTGGAGAAGACAGTTATCCCCAGATTTGCAGTTATTAAAATTTTGAAGAGAAAGGGTTTGATTAAGAGTGATTTGAAAATAAGTACCTTTATTAAGATCAGTGAGAAAGTGTTTTTGGAGAAATATGTGACTCGATTTCAGAGTTATGAGCCATTAGTATTGGCTGCATACAAAGGTCAGAAGTCAAATTGA 1143 0.4042 MHHFLLARLTTRTPHFGVLCHNAILFLNSRTLSVSNTKYHKGGTFNSFSIINSCGLSPKTALEFSKRLELKNPDGANAVIDLLRSYGFSKTQLCSLVKKLPSVLLSNPDKTLLPKLKFFRSIGFSSTDLPTFLVRKPTFLKSSLEKTIRPCYVVIRSLVRCDKEVVSTLKHGLWHFNSRNVVNNSLPNIEALRQLGLPQGSISLLVANFPSVTFMKHAGFVEAVEKVKEMGFDPLKTSFVMALKAFADISEASWKSKLEVLEKCGWSSDISLLAFKKHPQFMVSSESKILKIMSFLTKDVGLAPEDIARCPALLKCNLEKTVIPRFAVIKILKRKGLIKSDLKISTFIKISEKVFLEKYVTRFQSYEPLVLAAYKGQKSN 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g02222 380 SMART mt_12 272 303 IPR003690 GO:0003690|GO:0006355
Phco11g02222 380 SMART mt_12 203 233 IPR003690 GO:0003690|GO:0006355
Phco11g02222 380 SMART mt_12 304 338 IPR003690 GO:0003690|GO:0006355
Phco11g02222 380 SMART mt_12 130 161 IPR003690 GO:0003690|GO:0006355
Phco11g02222 380 SMART mt_12 237 267 IPR003690 GO:0003690|GO:0006355
Phco11g02222 380 SMART mt_12 94 125 IPR003690 GO:0003690|GO:0006355
Phco11g02222 380 Pfam mTERF 80 308 IPR003690 GO:0003690|GO:0006355
Phco11g02222 380 Pfam mTERF 293 356 IPR003690 GO:0003690|GO:0006355
Phco11g02222 380 Gene3D Transcription termination factor 3, mitochondrial 175 368 IPR038538 -
Phco11g02222 380 PANTHER CGI-12 PROTEIN-RELATED 47 362 IPR003690 GO:0003690|GO:0006355
Phco11g02222 380 FunFam Mitochondrial transcription termination factor-like 144 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g02222 Phco-Chr11 20110650 20111792 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Phco11g02222 mTERF 3e-31 No_clan