Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g02218 ATGGTCGATGCTGCTTTCATATTAGATGCAAAACAAGTCTTATTCATTTATATTTATATATATGCATATATTCTTCCTTTAAGGTTCTCTTGTTGCTGTTTTCTGCACGACGTGAAAGTGAAGAACATGAAGAATTCTAAGAAAACGGGTGTACGGAAATACCAAAAATCGGAAAATCCACGTTTGCGATGGACACCTGAACTCCATGAATACTTTGTTGAAGTTGTGGAAGGTCTTGGTGGAAAAAACAAGGCAACTCCAAAGAGCATTCTGCAGATGATGCATGTGAAAGGACTAAGAATCTCTCACATTAAAAGCCATCTTCAGATGTACAGGAACCTGAAGGGACATATGATTCTCTCATCAATGGATGAGAAGATGGAAGGGAATGAAGATGTTAAAGATCTCCCAATGTACTCCAATTGTTCATCCCAAAGATCGCAAGAAGACAAATTTAGGACATCAAAATATGAAATGGGGATTGTGACTAAAGAAATTCGCACGTTAGAAAACAAAGGGCTTTCACAGAGCAGTGAAACAGATTACGATCTAAATCAGGAACCCGAATCATGTGCATACGTACATAGTGATACGTCAAATGAAGAAAATAGTAGGACAATGAAATTTCTTGATCTCTCATTCTCTTTTAGCTCTCAACTATTTCCAACTATTCATGGTAATCAAGAGAGGATGCATTTTTCTTCACCAAATACAGCAGATAATCATGCCCTCGATTCTAATTCTGTACAATCTCATGGGAACAATTACATAAATTTAGACCTAGCAATATGA 792 0.3674 MVDAAFILDAKQVLFIYIYIYAYILPLRFSCCCFLHDVKVKNMKNSKKTGVRKYQKSENPRLRWTPELHEYFVEVVEGLGGKNKATPKSILQMMHVKGLRISHIKSHLQMYRNLKGHMILSSMDEKMEGNEDVKDLPMYSNCSSQRSQEDKFRTSKYEMGIVTKEIRTLENKGLSQSSETDYDLNQEPESCAYVHSDTSNEENSRTMKFLDLSFSFSSQLFPTIHGNQERMHFSSPNTADNHALDSNSVQSHGNNYINLDLAI 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g02218 263 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 116 IPR017930 -
Phco11g02218 263 Pfam Myb-like DNA-binding domain 62 112 IPR001005 -
Phco11g02218 263 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 42 172 IPR046955 GO:0003700
Phco11g02218 263 FunFam Two-component response regulator 55 119 - -
Phco11g02218 263 SUPERFAMILY Homeodomain-like 58 113 IPR009057 -
Phco11g02218 263 Gene3D - 59 115 - -
Phco11g02218 263 NCBIfam myb-like DNA-binding domain, SHAQKYF class 59 113 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g02218 Phco-Chr11 19991122 19995745 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Phco11g02218 Myb_DNA-binding 3.9e-07 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g02218 11 19991122 19995745 Phco11g02218 11 19991122 19995745 ECH
Phco11g02218 11 19991122 19995745 Phco3g01050 3 8972581 8976645 PCT