Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g02202 ATGAACAACAGTGCTCCTGATTGGAATTTTGGGAGTGATTCCTGTGTCACCACCAATCAAAAGAAGCCTATGGGGGTGGACCAAGAGCTTGTGGAGCTCCTGTGGCAAAATGGCCAGGTAGTGTTGCACAGCCAAACACATAGAAAACCGGTTGTGAATTCGATCGCTCCGAGACCGCTTCAGAGAGCTTTTCAATCAGCATTAAGGACCAGTGAGCCATTTGGGAACTCAAGTAACCTGATTCAAGATGATGAGACAGTCTCATGGATCCAATACCCCCTTGAGGATCCACTGGAACAAGAATTCTGTTCAAGCCTTTTATCTGAACTGCCACAGTGTGATGTTGAGTCCTATAAGCAAATTAAGCCATTTGAAGAGGGAAAGTTTACTAAATTGGATGCTTCTAGTGCCCCCAATGTGACTGTAAGTTCACAATCACCTACTATGAAACCATCCTCTTTTCAGGAATTCTCAGGAATTCCAGTACCTGCTCCAAGATTCCATGTTTCTGATTCACCTCAGAAAAATAATAATGACTTGGGTGGACCATGTAAGGTCCAAAAATTCTCTCACTTTTCACCTCCCTTTAATGTTTCTTCAGCATTGCCTAGTGCGCATTTTAGAGACAAAATTACTTGTAACATGTCAAAAAATGAGGTTAGAGAGTGCTCATTGATGACAGTTGGATCAAGTTACAGTGGTAGCAATCACATGACCCAAGATCCAGATGCTAGCAGGGTATCAAGCAATGGTGTTTGGACTACTACTTTATCTGTTGACCCTGAAGCTATCAGAGGTGATGTGCCGAGAACAATTCCTCTGAGTGAAAAAGGGAAATCAGAGATGCTTGAACCAACTGCTACTTCATCTTCTGGTGGCTCAGGTAGTAGTCTTGGAAAAACTTGTTCCTTATCTACCAGAAACCAGAGCCAAAAAAGAAAAACAATGGACGTTGAAGAATCTGAGGAGCATAGTGAGGACACAGAACATAAATCACCAGTTGGAAACAAGACATCTCAACGGACAGGGTCGGCTCGAAGGAACCGTGCTGCTGAAGTGCATAATCTATCAGAAAGGAGAAGGAGAGATAGGATCAATGAGAAGATGAAAGCATTGCAACAACTCATACCTCACAGTAGCAAGACAGACAAAGCATCAATGTTGGAGGAGGCAATCGAATATTTGAAATCACTTCAGTTACAACTTCAGCTAATGTGGATGGGATCTGGCATGACACCAATGATGTTTCCAGGAATTCAGCACTATATGTCTCAAATGGGTATGGGAATGGCTACATCTCCTTTCCCTCCTATTCAAAATCCGATGCAATTACCACGAGTACCGCTTGATCAGCCCGTATCTGCATCTCAGACACCAAACCAGACAACGATGTGTCAAAATCCTATTTTGGGTGCCTTTAATTACCAAAATCAGATGCAAAATCCAGCTCTTTCAGAGCAATATGCACGTTACATGGGCTATCATCTTATGCAAAATGCTTCTCAGCCAATGAATGTATTTAGATATGGTCCCCAGCCAGTACAGTATAGTCAAACAACGATTACACCCAGCAACAGCAGTGGAAACATGAGTGGAGCAGCAAATTTTGATGAGGCTGTGAGTGACAAAATGGGTTCTTCCACCTTTAACTAA 1653 0.4271 MNNSAPDWNFGSDSCVTTNQKKPMGVDQELVELLWQNGQVVLHSQTHRKPVVNSIAPRPLQRAFQSALRTSEPFGNSSNLIQDDETVSWIQYPLEDPLEQEFCSSLLSELPQCDVESYKQIKPFEEGKFTKLDASSAPNVTVSSQSPTMKPSSFQEFSGIPVPAPRFHVSDSPQKNNNDLGGPCKVQKFSHFSPPFNVSSALPSAHFRDKITCNMSKNEVRECSLMTVGSSYSGSNHMTQDPDASRVSSNGVWTTTLSVDPEAIRGDVPRTIPLSEKGKSEMLEPTATSSSGGSGSSLGKTCSLSTRNQSQKRKTMDVEESEEHSEDTEHKSPVGNKTSQRTGSARRNRAAEVHNLSERRRRDRINEKMKALQQLIPHSSKTDKASMLEEAIEYLKSLQLQLQLMWMGSGMTPMMFPGIQHYMSQMGMGMATSPFPPIQNPMQLPRVPLDQPVSASQTPNQTTMCQNPILGAFNYQNQMQNPALSEQYARYMGYHLMQNASQPMNVFRYGPQPVQYSQTTITPSNSSGNMSGAANFDEAVSDKMGSSTFN 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g02202 550 Gene3D - 344 405 IPR036638 GO:0046983
Phco11g02202 550 SMART finulus 355 404 IPR011598 GO:0046983
Phco11g02202 550 MobiDBLite consensus disorder prediction 520 534 - -
Phco11g02202 550 MobiDBLite consensus disorder prediction 312 334 - -
Phco11g02202 550 Coils Coil 355 375 - -
Phco11g02202 550 FunFam Basic helix-loop-helix transcription factor 344 407 - -
Phco11g02202 550 MobiDBLite consensus disorder prediction 282 311 - -
Phco11g02202 550 CDD bHLH_AtPIF_like 349 412 IPR047265 -
Phco11g02202 550 PANTHER TRANSCRIPTION FACTOR PIF3 18 511 IPR044273 GO:0003700|GO:0006355
Phco11g02202 550 MobiDBLite consensus disorder prediction 520 550 - -
Phco11g02202 550 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 349 398 IPR011598 GO:0046983
Phco11g02202 550 MobiDBLite consensus disorder prediction 347 362 - -
Phco11g02202 550 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 347 414 IPR036638 GO:0046983
Phco11g02202 550 MobiDBLite consensus disorder prediction 264 362 - -
Phco11g02202 550 Pfam Helix-loop-helix DNA-binding domain 353 399 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g02202 Phco-Chr11 19664055 19668267 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phco11g02202 HLH 1.7e-15 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g02202 11 19664055 19668267 Phco11g02202 11 19664055 19668267 ECH
Phco11g02202 11 19664055 19668267 Phco3g01041 3 8913297 8917246 PCT