Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g02193 ATGGCAGCGGGAACAGCAACTGAAGTAAGAGAGAGAGTTGGGTTGGTGAAGGTTTTCAAGAAGAAGATGGAACGGAGTGGTGGAATGGTAACTGGGTCGCATGAAAGGAATGAACTTGTTACAGTTAGACACGGTTCTGATAGTGGGTCTAAACCCTTAAAGAATTTAAATGGTCAGATTTGTCAAATATGTGGTGATACCATTGGATTAACGGCTACTGGTGATGTCTTTGTTGCTTGTCATGAGTGTGGCTTCCCACTTTGTCATTCTTGTTACGAGTATGAGCTGAAAAATGTGAGCCAATCTTGTCCCCAGTGCAAGACTAGATTCACAAGTCACCAAGAGGGTGCTGGAGTGGAGGGTGATGATGATGATGATGAAGATGCTGATGATCTAGATAATGAGATCAACTATGGCCAAGGAAACAATTCCAAGGCAGGGATGCAATGGGAAGAAGATGCTGACTTCTCTTCATCTTCTGGACATGATTCTCAAATACCAAATCCCCATCCAGCAAACGGGCAACCGATGTCTGGTGATATTCCATGTGCTACTTCTGATGCCCAATCTATGCAAACTACATCAGGTCCTATGGCTGCTGCAAAGCAACCGGGTCCTGAAAGTGACGAAGAGATAAGGAGAGTGCCGGAGATTGGAGGTGAAAGTGCTGGAACTGCAGCCTCTCGGCCGGATGCCAGATCAAATGTTGGTGCAGAACGTGTTCAGGGTACAGGAGAGGGTCAGAAGAAGAGAGGGAGAAGCCCAGCTGATAAAGAAAGCAAGCGGCTAAAGAGGCTATTGAGGAACAGAGTTTCGGCTCAACAAGCAAGGGAGAGGAAGAAGGCATACTTGATTGATTTGGAAACAAGAGTCAAAGACTTGGAGAAGAAGAATTCAGAGCTCAAGGAAAGACTTTCTACTTTGCAGAATGAGAACCAAATGCTTAGACAAATATTGAAGAACACAACAGCAAGCAGGAGAGGGAGCAATAGTGGTACCAATAATGCTGAATGA 1014 0.4517 MAAGTATEVRERVGLVKVFKKKMERSGGMVTGSHERNELVTVRHGSDSGSKPLKNLNGQICQICGDTIGLTATGDVFVACHECGFPLCHSCYEYELKNVSQSCPQCKTRFTSHQEGAGVEGDDDDDEDADDLDNEINYGQGNNSKAGMQWEEDADFSSSSGHDSQIPNPHPANGQPMSGDIPCATSDAQSMQTTSGPMAAAKQPGPESDEEIRRVPEIGGESAGTAASRPDARSNVGAERVQGTGEGQKKRGRSPADKESKRLKRLLRNRVSAQQARERKKAYLIDLETRVKDLEKKNSELKERLSTLQNENQMLRQILKNTTASRRGSNSGTNNAE 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g02193 337 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 264 279 IPR004827 GO:0003700|GO:0006355
Phco11g02193 337 Gene3D Single helix bin 280 321 - -
Phco11g02193 337 Pfam Zinc-binding RING-finger 51 127 IPR027934 -
Phco11g02193 337 Pfam bZIP transcription factor 258 319 IPR004827 GO:0003700|GO:0006355
Phco11g02193 337 CDD mRING-HC-C4C4_CesA 59 109 - -
Phco11g02193 337 MobiDBLite consensus disorder prediction 179 199 - -
Phco11g02193 337 PANTHER TRANSCRIPTIONAL ACTIVATOR HAC1 188 334 IPR044280 GO:0000981|GO:0045944
Phco11g02193 337 MobiDBLite consensus disorder prediction 119 134 - -
Phco11g02193 337 SMART brlzneu 257 321 IPR004827 GO:0003700|GO:0006355
Phco11g02193 337 MobiDBLite consensus disorder prediction 112 280 - -
Phco11g02193 337 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 44 135 IPR013083 -
Phco11g02193 337 MobiDBLite consensus disorder prediction 136 172 - -
Phco11g02193 337 Coils Coil 256 325 - -
Phco11g02193 337 CDD bZIP_HY5-like 262 313 - -
Phco11g02193 337 ProSiteProfiles Zinc finger RING-type profile. 61 107 IPR001841 -
Phco11g02193 337 SUPERFAMILY Leucine zipper domain 261 319 IPR046347 GO:0003700|GO:0006355
Phco11g02193 337 MobiDBLite consensus disorder prediction 244 280 - -
Phco11g02193 337 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 259 322 IPR004827 GO:0003700|GO:0006355
Phco11g02193 337 FunFam Transcription factor HY5 280 321 - -
Phco11g02193 337 FunFam Cellulose synthase A catalytic subunit 1 [UDP-forming] 44 135 - -
Phco11g02193 337 SUPERFAMILY RING/U-box 45 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g02193 Phco-Chr11 19462342 19466145 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Phco11g02193 zf-UDP 4.8e-37 CL0229