Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g02182 ATGGAAGAAGCAACTGAGATGCAATCAGAAGAGAATAAATTGTCAATGGAGAAAAATAAGAAAAGAAGACTCAAAACACCTGCCCAGCTCACGGCATTGGAAATTTTTTATAATGATCACAAATATCCCACGGAGGAAATGAAATCAGAACTTGCTGAAGAGTTGGAGTTGACAGAAAAGCAAATATCTGGATGGTTTTGCCACAGAAGATTGAAAGATAAAAAGTTGTTGAATGATGAAGTAGGTGCTAATGGACGACAAGATCGTTCAAGTGGTGTTGTCCAGGATCGTGGCAGCGGTCTAGTGCAGGATTCGTGTGGAAGCACTAAACATGGTGATTATAGGTATCTGGATCCCAAAGAGGTTGAGAGTCATGGCCTCTATAACCATGAATTTTCAGCTGCAGATATGACCTATGCACACAGGAACCATCATTATACAGAAAATGATAGTGCAACAGATAACACATCATCTGAGAGTTGCTCATCTTTGCAAGACCCGTTGCTTCCTCAAGGACAGGATCCATATGATATGGAGCCTTCTAGTCATTTGATGCCTAACAGGTCTCTTCCGCCCCTAAATCCCAAGGGTGCAAATAACATGGGATATAAACCTTCAGGATATTTAAAAGTGAAGGGAGAGATAGAACATGTTGCAATTACTGCTGTCAAAAAGCAGTTAGGAAATCATTTTCAGGAAGATGGACCATTACTTAGTGTTGAATTTGATACAATTCCTCCAGGGGCATTTGAAGGCCAAATTACAGATCTAGCTAATGAAGGATACTATGCTGCAAATCCTGCTCTTCCAAATTCACCAGAAGTCTCTGCTGCGAAAAAGCTATCCAGTAGCTCTAGATATGATTCATATTTTACCAAATTAAGGTTCCAAGATGCACATATGGAAGGAGGTGACTTTGGTTCTTTGCATGGTCCTGATTTCCAGGATAAGAAACTCCACAAGCATATAAATCAAAGACCAACTTTTCACAGTTTTACCAATCATTTTTCTCACAAGAACTCTTCCCTGGATTTGTATGTAGACTCTACTGGGGAAGCATCTGCTTATAACAGTGCTAAAAACCATAGGATGGGTACTAAGTATGGTTTTGAGGGGATGAGGTCAGACTCTGCTTCCAACCCTATTGACCACTATGAAGAGAATACCCTTGCAGTTAAGCAGATAGATTCACTGTTACATCTCTACGATAACATCAATCTGAAGAATGTACAAAAGAATGAATATGTAAAATCTAAGCCTTCAAATTCAATACATAAGTCTCAAATATACTTGAATGCTGAAGAAAAAGGGCTTACCAAAAGGATGGCCAAGGAAGAGAAGTTTAATGGCGATAGAAAGTTAAAAAAACATTATCATGATCCAGATGGAATTAGGGTGCTTTCAAATGAAAAGATGGTTGCAAAGCGAGCTAAACTTGACCCATTTGAACAATATGATGTTAAACAAACACCTGTTTCTGACCTGGAACCAAGAAAAAATCAAAGGTCTGCTGCAGAGATGCCATCTAGCTTTAGTGAGGATGAAACTGCTGAAACCAGTTCCTCGGTGGATTAA 1575 0.3924 MEEATEMQSEENKLSMEKNKKRRLKTPAQLTALEIFYNDHKYPTEEMKSELAEELELTEKQISGWFCHRRLKDKKLLNDEVGANGRQDRSSGVVQDRGSGLVQDSCGSTKHGDYRYLDPKEVESHGLYNHEFSAADMTYAHRNHHYTENDSATDNTSSESCSSLQDPLLPQGQDPYDMEPSSHLMPNRSLPPLNPKGANNMGYKPSGYLKVKGEIEHVAITAVKKQLGNHFQEDGPLLSVEFDTIPPGAFEGQITDLANEGYYAANPALPNSPEVSAAKKLSSSSRYDSYFTKLRFQDAHMEGGDFGSLHGPDFQDKKLHKHINQRPTFHSFTNHFSHKNSSLDLYVDSTGEASAYNSAKNHRMGTKYGFEGMRSDSASNPIDHYEENTLAVKQIDSLLHLYDNINLKNVQKNEYVKSKPSNSIHKSQIYLNAEEKGLTKRMAKEEKFNGDRKLKKHYHDPDGIRVLSNEKMVAKRAKLDPFEQYDVKQTPVSDLEPRKNQRSAAEMPSSFSEDETAETSSSVD 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g02182 524 MobiDBLite consensus disorder prediction 150 169 - -
Phco11g02182 524 ProSiteProfiles 'Homeobox' domain profile. 16 76 IPR001356 GO:0003677
Phco11g02182 524 Gene3D - 8 91 - -
Phco11g02182 524 MobiDBLite consensus disorder prediction 503 524 - -
Phco11g02182 524 SUPERFAMILY Homeodomain-like 16 79 IPR009057 -
Phco11g02182 524 MobiDBLite consensus disorder prediction 7 23 - -
Phco11g02182 524 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 524 - -
Phco11g02182 524 SMART HOX_1 18 80 IPR001356 GO:0003677
Phco11g02182 524 MobiDBLite consensus disorder prediction 82 110 - -
Phco11g02182 524 MobiDBLite consensus disorder prediction 84 106 - -
Phco11g02182 524 MobiDBLite consensus disorder prediction 147 198 - -
Phco11g02182 524 MobiDBLite consensus disorder prediction 1 23 - -
Phco11g02182 524 CDD homeodomain 20 75 IPR001356 GO:0003677
Phco11g02182 524 MobiDBLite consensus disorder prediction 478 524 - -
Phco11g02182 524 Pfam Homeodomain 20 75 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g02182 Phco-Chr11 19336293 19340976 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Phco11g02182 Homeodomain 3.9e-16 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g02182 11 19336293 19340976 Phco11g02182 11 19336293 19340976 ECH
Phco11g02182 11 19336293 19340976 Phco3g01013 3 8564753 8569371 PCT