Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g02177 ATGTGGCCCGGGGTGTCGAGGTCATTCAACCACAACCTTTCACCTCACCACGACATCTTCGTGGTGGCGCCCGCGTCGTCGTTCCACCACCACAACCACAACGACGCTGTTTTGTCCGATCCAAGCAACAACAGTTCCAACGCAACTGCACTCGGCGTCAACGTCTTTCCTCTCCTCACCGCCACGCCATGCCTCACTCCCGAGAGCGAGGGCATAATGGGAAACATCAATAACCACCGTAACAGAATTCAGCTATGGCAACCACATGAATCACCACAACACCAACACGCCGACGGCGTGTTGGCGTGTAACCACCGTGGTAGAATTCAGTTATGGCAAGAGCACGACGAGTCTCCGCCGCAGCAGCAGCAACATCCGAACGCGCCCGTGCACGAGCGTGAGGGGAGTGGGAGTGGAAGCGGCACGAGCACGTGCCAGGACTGTGGAAACCAGGCGAAAAAGGATTGCAGTCACAGGAGGTGCAGGACGTGCTGCAAGAGTAGGGGTTTCGATTGCGTCACGCACGTGAAGAGCACGTGGGTGCCGGCGGCGCGGCGGAGGGAGCGCCAGCTCATGACGGCCACAGCAGCGGTTGGGTCCAGTGGGTCCACTTCAGTCACCAAGAAACCTAGGCTCGTGCCTTCCCAGACCACAACCACTTCGCACACTTCCACGTCTAATAACACCACCACTCCTCCTAGGAGTTTCGACACTGGTTCTAGCCACCAAGATGTGAGTTTCAAGGAGTCACTACCTTGCCAAGTGCGTGCACCAGCAGAGTTCAAGTGTGTTCGTGTGACTGCAGTGGATGATGGGGATGATGAGTATGCCTATCAAGCTGTGGTGAAAATTGGTGGCCATGTGTTCAAAGGGTTTCTCTATGATCAAGGGGTTGAGGATAAAAGTGAGTATCCTAATCTATCTGAATTGCATTTGGGTGGTGGTGGAAATGGTGCAAGTGGAAGTGATGGTGGTGGTAGAAATGGGGTTTCTTCTTCCTCTCCAATGGTGGATCCTTCTGATGTCTATGCAGCTTCTGGTGGAGTGTTACTTGGAGGTTCATCAAACTATGATCGGTGGATTACAGAGAAGCCACATCATGTCAAGAGAATAGTTTATGTACTAAATTAA 1131 0.5332 MWPGVSRSFNHNLSPHHDIFVVAPASSFHHHNHNDAVLSDPSNNSSNATALGVNVFPLLTATPCLTPESEGIMGNINNHRNRIQLWQPHESPQHQHADGVLACNHRGRIQLWQEHDESPPQQQQHPNAPVHEREGSGSGSGTSTCQDCGNQAKKDCSHRRCRTCCKSRGFDCVTHVKSTWVPAARRRERQLMTATAAVGSSGSTSVTKKPRLVPSQTTTTSHTSTSNNTTTPPRSFDTGSSHQDVSFKESLPCQVRAPAEFKCVRVTAVDDGDDEYAYQAVVKIGGHVFKGFLYDQGVEDKSEYPNLSELHLGGGGNGASGSDGGGRNGVSSSSPMVDPSDVYAASGGVLLGGSSNYDRWITEKPHHVKRIVYVLN 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g02177 376 NCBIfam LRP1 C-terminal domain 251 298 IPR006511 -
Phco11g02177 376 NCBIfam putative zinc finger domain, LRP1 type 144 186 IPR006510 -
Phco11g02177 376 MobiDBLite consensus disorder prediction 115 144 - -
Phco11g02177 376 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 27 346 IPR007818 GO:0003700|GO:0006355
Phco11g02177 376 MobiDBLite consensus disorder prediction 115 129 - -
Phco11g02177 376 Pfam Domain of unknown function (DUF702) 142 299 - -
Phco11g02177 376 MobiDBLite consensus disorder prediction 195 243 - -
Phco11g02177 376 MobiDBLite consensus disorder prediction 306 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g02177 Phco-Chr11 19227968 19230391 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Phco11g02177 DUF702 1.7e-60 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g02177 11 19227968 19230391 Phco11g02177 11 19227968 19230391 ECH
Phco11g02177 11 19227968 19230391 Phco3g01010 3 8502985 8505155 PCT