Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g02135 ATGGTGCCTCGTATTCTCATTACTAGACTATCCGCGTCCTTCACACACCACAGAAGCACCCAATTCCAATTGGGTTCTCTGCTGCTACACAAAAACAATGCCTTTCTTTTTATCTTTAAAACATTCACTTCTGGTGGGAACAGACTCAAAGGTGTCACCTTTACCGTGTCTTACCTCATCAACTCTTGTGGGTTGTCCCTGGAATTGGCCAAGGAACTCTCCAAGAGAGTGAAATTGAAAACCCCAGATGGTCCAAATATTGTTATTGACACTCTCAAGAACTATGGATTCTCCAAAGCTCTGGTTGCAAAACTCGTTGAGAAGAATCCCAGGTTGCTTGCCGCAAATGTCGAGACGACCCTTTTGCCCAAACTCAAGTTCTTCCACTCTATTGGGGTTTCCAACGCTGACATGCATGAGATCGCACTTGAAAGCCCCCTTATCTTGCAAAGGAGTCTGGAAAATATCCTTGTGCCACGATACGAGATTATCAGGCGTATAGTTGGTGATGATCGGAAAGTTGTTAAAGTTTTGACAAAAGTCCCATTTAGCTTCACGGTGTGTGACCTAAGGAAATGCTTGGTTCCAAACATTGAGGTTTTGAGACAATCCGGTGTGCCTCAGGGTTCTATCTCCCTGTTGGTGGTCAATTTCCCCAGTGCAACAATGTGGAAGCCTTACAAATTTGTGGAAGTTGTCGAGAGAGTTAAGAAATTTGGGTTTGACCCTAAGAGAACAAGTTTTGTCATGGCCATCCAAGTGCTTATAACTATGCATAAAGGGGCATGGGAATCGAGATTTGAGATTTATGAGAGGTGGGGCTGGAACTGGGAAATATTTCTTCAAGCATTTTTGAAGTATCCCAATTTTGTGAAGTTGTCCGATGAGACAGTTACGAAGAAAATGAATTTCCTAGTTAATGATATGGGTTTGTCCTCATTAGCAATTGCCGCATTTCCTCCTATTCTAGCCTACAACTTGGAGAAGAGGATTATCCCTAGATTCTCAGTAATCAAAATCTTGAAATCAAAAGGTTTGCTTAGGAGTAGTTCGAGTTTTAGTTACCATATATGCATGACCGACAATTCTTTTTTGAAGAAATTTGTCATTAGTTTCCAGAAAGATTTGCCTCTCTTACCAGATGTCTATAAAGGATTGATTAATCATGATGATGTAATGTAG 1182 0.4129 MVPRILITRLSASFTHHRSTQFQLGSLLLHKNNAFLFIFKTFTSGGNRLKGVTFTVSYLINSCGLSLELAKELSKRVKLKTPDGPNIVIDTLKNYGFSKALVAKLVEKNPRLLAANVETTLLPKLKFFHSIGVSNADMHEIALESPLILQRSLENILVPRYEIIRRIVGDDRKVVKVLTKVPFSFTVCDLRKCLVPNIEVLRQSGVPQGSISLLVVNFPSATMWKPYKFVEVVERVKKFGFDPKRTSFVMAIQVLITMHKGAWESRFEIYERWGWNWEIFLQAFLKYPNFVKLSDETVTKKMNFLVNDMGLSSLAIAAFPPILAYNLEKRIIPRFSVIKILKSKGLLRSSSSFSYHICMTDNSFLKKFVISFQKDLPLLPDVYKGLINHDDVM 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g02135 393 Gene3D Transcription termination factor 3, mitochondrial 169 376 IPR038538 -
Phco11g02135 393 FunFam Mitochondrial transcription termination factor-like 153 376 - -
Phco11g02135 393 SMART mt_12 313 347 IPR003690 GO:0003690|GO:0006355
Phco11g02135 393 SMART mt_12 103 134 IPR003690 GO:0003690|GO:0006355
Phco11g02135 393 SMART mt_12 175 207 IPR003690 GO:0003690|GO:0006355
Phco11g02135 393 SMART mt_12 281 312 IPR003690 GO:0003690|GO:0006355
Phco11g02135 393 SMART mt_12 139 170 IPR003690 GO:0003690|GO:0006355
Phco11g02135 393 Pfam mTERF 89 244 IPR003690 GO:0003690|GO:0006355
Phco11g02135 393 Pfam mTERF 256 364 IPR003690 GO:0003690|GO:0006355
Phco11g02135 393 PANTHER CGI-12 PROTEIN-RELATED 54 371 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g02135 Phco-Chr11 18234546 18235727 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Phco11g02135 mTERF 6.4e-19 No_clan