Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g02129 ATGCTTCACTCAACATGCTTCTTCTCACTTTTCCTATCGTTTACGCTTCACTTATCAGGTATCAATTCCGCAAAAATGACTTTCATCAACCAATGCAACTACACGGTGTGGCCGGCTTTGACCAGTAACGTCAATCTTTCAGCCACCGGGTTCGTTTTGCCAAGCGGCCAAACTTCCAGTGTCAACGTACCCGTGAATTGGAGAGGTCAAATCTGGGGCCGCACACTCTGCACCACCGACACAATTACCGGAAATTTCTCATGTGTTACCGGCGACTGCAATTCCGGAAAGATAGCATGTGACAATGTAGGGTCAGCACCGAACACGCTGGTGGAGTTCGCCTTAGACAGCAACAGCGGGCTTGACTCTTATGACGTGAGCTTGGCGGACGGGTTCAACATGCCGGTGATCGTTGTTCCCGTGAGTGGTTCTGACAGCAACTGTGAGAGCACGGGGTGCGTGCTGGATTTGAACGCAGTGTGTCCGACGGAGCTAAAGTTAACCAGAAATAAGGAAGTGGTGGCATGTCAGGACCCTTGCAGAGTGTTCAGAACGGAGGAGTATTGTTGCTTTAGAAACCGTTCCTCGTGCGAACCAACTACGTTCTCCACATTTTTCAAGACGGCATGTCCCCAAGCCTACAGCTACAAGAAAGACGACGCAACGAGCACCTTCAACTGTTCCACTCCTGCAGACTACAACATTGTCTTCTGCCCTAAATCTAGCAATGCCAGTCGAAAGGTTGGTGACTCACTCATTGCTGGTGGTAATGAGACATCTAAGTGGCTTTCCCCTTCAGGTGATTTTGCATTTGGCTTCTACCAACTTCCTAATAAGCTTTTCTTACTGGCTATATGGTACAACCAGATACAAAATACGACCATCATTTGGTCTGCAAATGGAGACAACCTTGCTCCAATAGGATCAAAGTTAGAACTAAATGATTCCCATGGACTAGTACTAAAAAACCCTCAAGGTATAGAGTTATGGACATCAAATTTTACATCAGGTACAATTTTTAATGGTCTTATGAACGATGATGGAAATTTCCAAATATTTGATCAAAACTTTATGTCATTATGGGAGAGTTTCTCTCATCCAACTGACACATTGGTACCTACTCAAGTACTAGAGTTAGGTGGAGAACTCTCCTCTCGACAAGGGGAGTTCAACTTTTCAATTGGAAGGTTCAAACTTCATCTACAAGAGGATGGGAATCTTGTGTTTAAGCTTGTAAATTTGCTTGAGCCTTACTTTAATACTGGCACTGCTGATTCAAATGACGAAACAAATGTTGGCATCAAATTTGTATTTGATAAACCAAGCTTCTTGTACGTACTGAAGAAAAATGGGGAAAAGTTTAAAGTCAGCAACGAGAAGACCTCTTCTAATGATGTCTACTACAAAGCAACAATCAATTATGATGGAGTTTTTACTGTATCATATTACCCCAAAGATCCAAAAAAAGAACAAAGGTGGGTCACTTTAAACGCAATACCAGAAAATATTTGTCTAAATTCTACTTTCAAAGATGGTGGAGGAGTTTGTGGGCTTAATAGCATATGCAACCTGAAAGAAGATGACCGCAGGCCCATCTGTAACTGCCAAGAGAGATATTCTCTAATTGATTCAAATAACATGTATGGTGGTTGCATACCCCATTTCCTGAAGCAAAAGAAGAAAAATGATCATGATACCTTGATCATCGTGATATCAGTTCTTTTGGGCTTCTCAATGTTGGTCATTTTAATGTTGGTTGGTGCAATGTATTTTGGTTTCTCCTACAACCGCAAGAAGATCAAAAGTGGTAGAACCAACAATGGTGTTATTGAGAAAAACTTGTGTAACTTCACCTTCAATGAACTTGTAGAAGCAACTGGTAACTTTAGTGAAGAATTGGGAAGGGGATCTTTCAGCATTGTCTACAAAGGAACAATAGACATGACAAGTTTGGCTGTTAAGAAATTAGACAAATTGTTTCGAGACAATGACAAGGAATTTCAAACTGAAATGAATGTAATAGGTCAAACTCATCATAGGAATCTGGTTCGTCTACTTGGATACTGCAATGAAGGACAACACAGAATTTTGGTGTATGAGTTTATGAGCAATGGCATCTTGGCAAGCTTCCTTTTCACCCCTTTGAAAGCAAATTGGAGACAACGATTTGAAATTGCCTCTGGGATTGCAAGAGATTTTGGATTGGCAAAGCTATTACTGATCAATCAAAGCCACACTGAAACTGGAATTAGAGGAACAAAAGGGAGGAATGTAGAAAAGGAGCTTGTTGATGAAGAAAAAGGGATATTGACAGATTGGGCATATGATTGCTTCAAGACTAGAAGACTAGACATTCTTCTAGAAAATGATGATGAAGCTGTCAAGAACATTAAGAGTTTTGAAAAATTTGTGATGATTGCTCTTTGGTGCATTCATGAAGATCCCTCTCTTAGACCAACAATGAAGAAGGTTTTGCTAATGCTGGAAGGAATTGTTGAAGTTTCAATACCCCCAAATCCCTACCTTTATGGTTTTGCAAGTTAA 2544 0.4096 MLHSTCFFSLFLSFTLHLSGINSAKMTFINQCNYTVWPALTSNVNLSATGFVLPSGQTSSVNVPVNWRGQIWGRTLCTTDTITGNFSCVTGDCNSGKIACDNVGSAPNTLVEFALDSNSGLDSYDVSLADGFNMPVIVVPVSGSDSNCESTGCVLDLNAVCPTELKLTRNKEVVACQDPCRVFRTEEYCCFRNRSSCEPTTFSTFFKTACPQAYSYKKDDATSTFNCSTPADYNIVFCPKSSNASRKVGDSLIAGGNETSKWLSPSGDFAFGFYQLPNKLFLLAIWYNQIQNTTIIWSANGDNLAPIGSKLELNDSHGLVLKNPQGIELWTSNFTSGTIFNGLMNDDGNFQIFDQNFMSLWESFSHPTDTLVPTQVLELGGELSSRQGEFNFSIGRFKLHLQEDGNLVFKLVNLLEPYFNTGTADSNDETNVGIKFVFDKPSFLYVLKKNGEKFKVSNEKTSSNDVYYKATINYDGVFTVSYYPKDPKKEQRWVTLNAIPENICLNSTFKDGGGVCGLNSICNLKEDDRRPICNCQERYSLIDSNNMYGGCIPHFLKQKKKNDHDTLIIVISVLLGFSMLVILMLVGAMYFGFSYNRKKIKSGRTNNGVIEKNLCNFTFNELVEATGNFSEELGRGSFSIVYKGTIDMTSLAVKKLDKLFRDNDKEFQTEMNVIGQTHHRNLVRLLGYCNEGQHRILVYEFMSNGILASFLFTPLKANWRQRFEIASGIARDFGLAKLLLINQSHTETGIRGTKGRNVEKELVDEEKGILTDWAYDCFKTRRLDILLENDDEAVKNIKSFEKFVMIALWCIHEDPSLRPTMKKVLLMLEGIVEVSIPPNPYLYGFAS 847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g02129 847 ProSiteProfiles Protein kinase domain profile. 627 847 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco11g02129 847 ProSitePatterns Protein kinases ATP-binding region signature. 633 655 IPR017441 GO:0005524
Phco11g02129 847 FunFam Serine/threonine-protein kinase 241 366 - -
Phco11g02129 847 Gene3D - 368 497 IPR036426 -
Phco11g02129 847 Gene3D Thaumatin 24 239 IPR037176 -
Phco11g02129 847 PRINTS Pathogenesis-related protein signature 229 238 IPR001938 -
Phco11g02129 847 PRINTS Pathogenesis-related protein signature 49 58 IPR001938 -
Phco11g02129 847 PRINTS Pathogenesis-related protein signature 25 37 IPR001938 -
Phco11g02129 847 PRINTS Pathogenesis-related protein signature 122 138 IPR001938 -
Phco11g02129 847 PRINTS Pathogenesis-related protein signature 70 81 IPR001938 -
Phco11g02129 847 SUPERFAMILY alpha-D-mannose-specific plant lectins 281 423 IPR036426 -
Phco11g02129 847 ProSiteProfiles Thaumatin family profile. 23 239 IPR001938 -
Phco11g02129 847 SMART tha2 26 239 IPR001938 -
Phco11g02129 847 Gene3D - 249 367 IPR036426 -
Phco11g02129 847 FunFam S-receptor-like serine/threonine-protein kinase 596 701 - -
Phco11g02129 847 ProSitePatterns Thaumatin family signature. 84 100 IPR017949 -
Phco11g02129 847 Gene3D Transferase(Phosphotransferase) domain 1 753 837 - -
Phco11g02129 847 Pfam Protein tyrosine and serine/threonine kinase 629 731 IPR001245 GO:0004672|GO:0006468
Phco11g02129 847 SUPERFAMILY Osmotin, thaumatin-like protein 24 240 IPR037176 -
Phco11g02129 847 CDD TLP-PA 27 238 - -
Phco11g02129 847 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 756 839 - -
Phco11g02129 847 SMART blect_4 251 367 IPR001480 -
Phco11g02129 847 SUPERFAMILY Protein kinase-like (PK-like) 619 838 IPR011009 -
Phco11g02129 847 Pfam Thaumatin family 30 239 IPR001938 -
Phco11g02129 847 FunFam THAUMATIN-LIKE PROTEIN 1 24 239 - -
Phco11g02129 847 Gene3D Phosphorylase Kinase; domain 1 590 701 - -
Phco11g02129 847 FunFam Serine/threonine-protein kinase 368 507 - -
Phco11g02129 847 Pfam D-mannose binding lectin 294 378 IPR001480 -
Phco11g02129 847 ProSiteProfiles Bulb-type lectin domain profile. 249 365 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g02129 Phco-Chr11 18101070 18109889 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Phco11g02129 Thaumatin 7.1e-65 CL0293