Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g02118 ATGGACGGTGCGACACAATCCGCCGCCGCCGCCGCCGCCGCAGGAGGACCGGCGCCGTTTCTTCTGAAGACATACGACATGGTGGACGATTCCTCCACCAGCGACATCGTTTCTTGGAGCTCATCCAACACCAGCTTCGTCGTGTGGAATCCGCCGGAGTTCGCTCGCCTTCTTCTACCGACCTATTTCAAGCACAACAACTTCTCCAGCTTCATCCGCCAGCTCAATACCTACGGTTTCCGAAAAATACATCCAGAGCGATGGGAATTTGCTAACGAGGAGTTTGTGAAAGATCAGAAGCATCTTCTTAAGAATATACATCGCAGGAAACCTATCCACAGTCATAGTCATCCTCCGGGTACAATTGTAGATCCAGAAAGAGCAGCATTTGAGGAAGAAATCGAGAAACTTTCCAATGAGAAATCTTCTCTTGAGTCCAATATTCATAATTTCAGACAACATCAGTCAGCAGCAAAGCTTCAACTAGAAGAGTTTCTGCAGCGGTTAGATGGTACTGAAAAGAGGCAGAAACAATTGCTGAACTTCTTTGAGAAGGCTCTTCAGAATCCTAGTTTTGTTGAACATCTTTCACGCAAAATTGAGTCCATGGATTTATCAGCATATAATAAGAAGAGGCGATTGCCTCAAGTTGATAATGTTCAACCGGTTGCAGAAAGTAGCTTCGTGGACAGTCAAAGCAATTTTAGAATGGAATTTGGAAATGTCTTCCATCAGGATTTCTCGAATAAACTCAGACTGGAATTGTCACCGGCTGTGTCAGATATGAACCTGGTATCACGTAGCACACAGAGTTCAAATGAAGATGAGGAAAGTCCACAGAAAAAACTGTCTGAAGTGGAACCAAAAGGAGTGCACACAAGAACAGCTCTTACATTTGCACCTGAAACATTAGAACTTGCGGATACCGGGACTTCTTTTACTTTTAAGATGGATTCATGTTTATCGCTAAAAGCAACAACTGCTGAGAGCTCGAAACTGATCTCTTTGGAGCCAAGTAGTGAAGAAGGCGATAGTCATATATCCTGCCAATTAAACTTAACTCTGGCATCTTGTCCATTGCAAGTAAATAGAAATTCATATTTAGCCAGATCACCCCAAATCGACTGTCAAGAAATTGGCAAATTGGCAGAATCCAGATTTTTTTCCAGTGGTAAAGAATCTGAAAGTGGTGTTTCCTCAAACCAAAATGTAGCTGCTGAGGCTACCAACTTAGCTTCACCACAGGAGGCTCCAAATAACAACAATCAAGTTAATCCAGCTCCTCCAGACAAGGTGAATGATGTTTTCTGGGAACAGTTTCTTACCGAAAGGCCAGGCTGTTCTGACAATGAAGAGGCAATATCCAACTACCGAGCCAACCCATATGATGAACAAGATGAAGGACGGTCACCTCATGGAATATCTAGAAACATTAAGAACATGGACCAACTCAGACTTTGA 1461 0.4346 MDGATQSAAAAAAAGGPAPFLLKTYDMVDDSSTSDIVSWSSSNTSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRKIHPERWEFANEEFVKDQKHLLKNIHRRKPIHSHSHPPGTIVDPERAAFEEEIEKLSNEKSSLESNIHNFRQHQSAAKLQLEEFLQRLDGTEKRQKQLLNFFEKALQNPSFVEHLSRKIESMDLSAYNKKRRLPQVDNVQPVAESSFVDSQSNFRMEFGNVFHQDFSNKLRLELSPAVSDMNLVSRSTQSSNEDEESPQKKLSEVEPKGVHTRTALTFAPETLELADTGTSFTFKMDSCLSLKATTAESSKLISLEPSSEEGDSHISCQLNLTLASCPLQVNRNSYLARSPQIDCQEIGKLAESRFFSSGKESESGVSSNQNVAAEATNLASPQEAPNNNNQVNPAPPDKVNDVFWEQFLTERPGCSDNEEAISNYRANPYDEQDEGRSPHGISRNIKNMDQLRL 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g02118 486 MobiDBLite consensus disorder prediction 446 486 - -
Phco11g02118 486 MobiDBLite consensus disorder prediction 264 289 - -
Phco11g02118 486 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 13 279 IPR027725 -
Phco11g02118 486 MobiDBLite consensus disorder prediction 412 428 - -
Phco11g02118 486 MobiDBLite consensus disorder prediction 412 431 - -
Phco11g02118 486 PRINTS Heat shock factor (HSF) domain signature 71 83 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco11g02118 486 PRINTS Heat shock factor (HSF) domain signature 58 70 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco11g02118 486 PRINTS Heat shock factor (HSF) domain signature 20 43 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco11g02118 486 Coils Coil 127 154 - -
Phco11g02118 486 SMART hsfneu3 16 109 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco11g02118 486 Gene3D - 14 110 IPR036388 -
Phco11g02118 486 MobiDBLite consensus disorder prediction 274 289 - -
Phco11g02118 486 ProSitePatterns HSF-type DNA-binding domain signature. 59 83 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco11g02118 486 SUPERFAMILY "Winged helix" DNA-binding domain 16 109 IPR036390 -
Phco11g02118 486 FunFam Heat shock transcription factor 1 13 110 - -
Phco11g02118 486 Pfam HSF-type DNA-binding 20 109 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g02118 Phco-Chr11 17914529 17918777 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Phco11g02118 HSF_DNA-bind 3.3e-31 CL0123