Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g02011 ATGGGTTGTTGTCTAACTAAAGATTCAGAGCCAGAACACAATGGTTATAGACATCCTGCGACTGGTGGTGTGCACACCCAGAAGACTCATGAACCTTTGGTCAACCAATCAAGAGTACCTGCAAATCAACCATATCATTTACAGGAAAAGCATGCTGCTGCATCCACTGCTCAGACAGTGTCTCAGATGCCATGGAAGCCTTCTGGTCCTGCCCCTAGTCCTAAACCTGCGGCTGGTGTTAAGCAAGACACAATTCTAGGGAAGCAGTTTGAGGATGTGAAGCAGTTCTACACACTTGGGAAGGAATTGGGTAGAGGGCAATTTGGGGTGACATATCTTTGCATTGAGAATTCAACTGGGATGCAGTATGCTTGCAAGTCTATTTCTAAGAGGAAACTTGTGAGTAAATCTGATAAAGAGGATATAAAGAGGGAGATTCAGATTATGCAGCATTTGAGTGGGCAACCCAACATTGTTGAGTTCAAAGGGGCTTACGAGGATAGGATATCAGTTCATGTTGTGATGGAGCTGTGTGCTGGTGGGGAGCTTTTCGATAGGATTATCGCCAAGGGGCATTACAGTGAGAGGGCTGCTGCTTCAATATGCAGACAAATTGTAAATGTAGTTCATATCTGCCATTTCATGGGTGTGATGCATAGGGATCTGAAGCCAGAGAATTTCTTGTTATCTAGTAGGGATGAAAATGCACTACTCAAGGCAACAGATTTTGGTTTGTCCGTTTTCATTGAAGAAGGAAAGGTATATCGGGATATAGTTGGTAGTGCTTACTATGTTGCTCCTGAAGTTCTGCGGCGCAGATGTGGGAAGGAAATAGATATATGGAGTGCAGGAGTCATATTGTATATCTTACTTAGTGGAGTCCCTCCATTTTGGGCTGAGTCTGAGAAGGGAATATTTGATGCCATATTGGAAGGTCACATTGATTTTGAAAGTCAACCATGGCCAAACATTTCAAACAGTGCCAAGGATCTCGTTCGTAAGATGCTTATACCGGATCCAAAGAAACGCATTACCTCTGCTCAAGTTCTCGAGCACCCATGGATTAAAGATGGAAATGCTCCAGACAAGCCAATAGACAGCGCAGTCCTTTCCAGAATGAAGCAATTCAGGGCAATGAACAAACTAAAGAAACTTGCCCTCAAGGTCATTGCTGAGAATATGTCTGCAGAAGAGATCCAAGGTTTGAAGGCAATGTTTACAAATATGGACACTGACAAGAGTGGTACAATCACCTATGAAGAACTAAAGGCAGGATTGCATAGACTTGGCTCAAAGCTTACAGAGGCTGAAGTGAAACAGCTTATGGACGCTGCTGATGTAGATGGAAATGGCTCAATTGACTACATAGAATTCATCACAGCTACCATGCATAGACACAAGTTAGAAAGAGATGACCAACTCTTCAAGGCCTTCCAATATTTTGATAAAGACAACAGTGGGTATATTACAAGAGATGAACTGGAATCAGCCATGAAAGAATATGGTATGGGTGACGATGCCACGATCAAGGAAATCATATCTGAAGTTGATACAATTATCTCTGAAGTGGATACAGATCATGATGGTAGAATCAACTATGAAGAATTCTCTGCAATGATGAAGAGTGGAAACCAACAATGCAAGCTATTCTAA 1653 0.4241 MGCCLTKDSEPEHNGYRHPATGGVHTQKTHEPLVNQSRVPANQPYHLQEKHAAASTAQTVSQMPWKPSGPAPSPKPAAGVKQDTILGKQFEDVKQFYTLGKELGRGQFGVTYLCIENSTGMQYACKSISKRKLVSKSDKEDIKREIQIMQHLSGQPNIVEFKGAYEDRISVHVVMELCAGGELFDRIIAKGHYSERAAASICRQIVNVVHICHFMGVMHRDLKPENFLLSSRDENALLKATDFGLSVFIEEGKVYRDIVGSAYYVAPEVLRRRCGKEIDIWSAGVILYILLSGVPPFWAESEKGIFDAILEGHIDFESQPWPNISNSAKDLVRKMLIPDPKKRITSAQVLEHPWIKDGNAPDKPIDSAVLSRMKQFRAMNKLKKLALKVIAENMSAEEIQGLKAMFTNMDTDKSGTITYEELKAGLHRLGSKLTEAEVKQLMDAADVDGNGSIDYIEFITATMHRHKLERDDQLFKAFQYFDKDNSGYITRDELESAMKEYGMGDDATIKEIISEVDTIISEVDTDHDGRINYEEFSAMMKSGNQQCKLF 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g02011 550 ProSitePatterns Serine/Threonine protein kinases active-site signature. 217 229 IPR008271 GO:0004672|GO:0006468
Phco11g02011 550 ProSitePatterns EF-hand calcium-binding domain. 410 422 IPR018247 -
Phco11g02011 550 ProSiteProfiles EF-hand calcium-binding domain profile. 469 504 IPR002048 GO:0005509
Phco11g02011 550 FunFam calcium-dependent protein kinase 1 183 361 - -
Phco11g02011 550 ProSiteProfiles Protein kinase domain profile. 97 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco11g02011 550 SUPERFAMILY Protein kinase-like (PK-like) 96 376 IPR011009 -
Phco11g02011 550 ProSitePatterns Protein kinases ATP-binding region signature. 103 126 IPR017441 GO:0005524
Phco11g02011 550 ProSitePatterns EF-hand calcium-binding domain. 524 536 IPR018247 -
Phco11g02011 550 SMART efh_1 515 543 IPR002048 GO:0005509
Phco11g02011 550 SMART efh_1 437 465 IPR002048 GO:0005509
Phco11g02011 550 SMART efh_1 401 429 IPR002048 GO:0005509
Phco11g02011 550 SMART efh_1 473 501 IPR002048 GO:0005509
Phco11g02011 550 ProSiteProfiles EF-hand calcium-binding domain profile. 433 468 IPR002048 GO:0005509
Phco11g02011 550 PANTHER SERINE/THREONINE-PROTEIN KINASE 90 536 - -
Phco11g02011 550 Gene3D - 362 546 - -
Phco11g02011 550 SUPERFAMILY EF-hand 378 543 IPR011992 -
Phco11g02011 550 Gene3D Transferase(Phosphotransferase) domain 1 183 361 - -
Phco11g02011 550 ProSitePatterns EF-hand calcium-binding domain. 446 458 IPR018247 -
Phco11g02011 550 MobiDBLite consensus disorder prediction 1 79 - -
Phco11g02011 550 FunFam Calcium-dependent protein kinase 1 362 544 - -
Phco11g02011 550 ProSiteProfiles EF-hand calcium-binding domain profile. 397 432 IPR002048 GO:0005509
Phco11g02011 550 Pfam EF-hand domain pair 472 541 IPR002048 GO:0005509
Phco11g02011 550 Pfam EF-hand domain pair 402 462 IPR002048 GO:0005509
Phco11g02011 550 ProSitePatterns EF-hand calcium-binding domain. 482 494 IPR018247 -
Phco11g02011 550 CDD EFh 402 461 IPR002048 GO:0005509
Phco11g02011 550 Gene3D Phosphorylase Kinase; domain 1 99 182 - -
Phco11g02011 550 SMART serkin_6 97 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco11g02011 550 FunFam Calcium-dependent protein kinase 1 99 182 - -
Phco11g02011 550 MobiDBLite consensus disorder prediction 28 43 - -
Phco11g02011 550 Pfam Protein kinase domain 97 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco11g02011 550 CDD STKc_CAMK 96 354 - -
Phco11g02011 550 ProSiteProfiles EF-hand calcium-binding domain profile. 511 546 IPR002048 GO:0005509
Phco11g02011 550 CDD EFh 473 541 IPR002048 GO:0005509
Phco11g02011 550 MobiDBLite consensus disorder prediction 52 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g02011 Phco-Chr11 16464847 16472253 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Phco11g02011 Pkinase 6.2e-73 CL0016