Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g01998 ATGGAGGGTATGGCAAGCAGTAATGATGTTGTTGCCAATGGTGAAAATGGGTTGCTGGTAATGATTGGTGGTGACAATGAATTTGGTGGCGGCGGTGGCGGTGAGGGTGGTGGCAATGTGGAGGAGGTGGCTCTGAAGAAGGGTCCTTGGACAACTGCAGAAGATGCTGTTCTAATAGATTATGTGACAAAACATGGTGAAGGGAATTGGAATGCAGTGCAGAAGAACACAGGGTTGAATAGGTGTGGGAAGAGTTGTAGGCTTAGGTGGGCTAACCATTTGAGGCCCAATTTGAAGAAGGGTGCATTCTCTCCTGAGGAAGAGAAGCTCATCATTGACCTTCATTCACAATTTGGCAACAAATGGGCCAGAATGGCTGCTCTGTTGCCTGGGAGAACAGACAATGAGATCAAGAACTATTGGAACACAAGGATCAAACGTCGCCAAAGACAAGGTCTCCCTCTCTATTCAGAGGAGCATGATAACCATTGTTCCACAACACCAACCCCTTCCCCATGCCTCACACAAACAGCATCAAGCCCTAATAACACTCTCACAAACTATGAGTTCTTCAACCAAAACCACCACCAACACTACCAACAACAACAACAACAAAACCACCAACAACAACACCAACCTCTATCTCCAACTGCACCTCATCATTCCCCTCTCAGTTCCCCTCTCCAACACAGACAACCCTTCACCTCTTCTTCACCTCTCACTTTCTTAGACCATTTACCTCTTCCACTCTCCTCCTCTTCACCCTCCCCTCTCTCCTTCACCTTCCAAAGACCAGAACCAGTCCTATGCAGCCCTCTTCGCTTCAAACGCTACCGTGCCTCTCCAAGCTACAACCCCCTCCCTGACCTTCCTCTCACCAACCAATTCCCTCATCTTGATGGATTCAGGTTCCCAGTTTCTTCAGGTTTCTCTCCGTTTTTTCAACCCTCTTTCTTAGAATCTGACCGAGGCATTTCTTCTTCCTCACCTTTCCAACCCAAATTGGAGCTCCCTTCAAACCAGTTCTACAAACCACCCCAAGAGCAAGACATCAAGCTTGACATTGATTTCAGTGATCCTTCTTTTCAAACTAGTAGCGGCTTGCTGGGGGATCTTCTCTTGGAGGCTCAGGCTTTGGCTTCGGGCCAGAACTCAAAGAAACGAACTTACTTGAGTTTAAATGAGGGAAATGACATGTTTGATGCATGCCAAAGCTTTGAGGACTTTCCATCTAGCTCTCTCTACTGGCCTTCTTCTGCATCAGCACCAAAAGCAAAGGAAGAGGCACCTGACTTCAGCAAATTCATGAATGAGGACTTGTCATCATTGCTCACAGTGATTCCATCTTCCAACACACAAGGTCATGAGTGGCTAAATAATGGTGTCCCAGAAGGGTCCAATGTCCAACCTTCTGGTAGTGGCATGACAGATGACAATTTTGGACTTGATATGAAGCCAGTAGCTTCCTTGTTTCCTCTCACCAATACCACAAACCACAATGAAAACCAAGGCTGCTACACTTGGGACAATTTGCCTGGTCTCTGCTAA 1548 0.469 MEGMASSNDVVANGENGLLVMIGGDNEFGGGGGGEGGGNVEEVALKKGPWTTAEDAVLIDYVTKHGEGNWNAVQKNTGLNRCGKSCRLRWANHLRPNLKKGAFSPEEEKLIIDLHSQFGNKWARMAALLPGRTDNEIKNYWNTRIKRRQRQGLPLYSEEHDNHCSTTPTPSPCLTQTASSPNNTLTNYEFFNQNHHQHYQQQQQQNHQQQHQPLSPTAPHHSPLSSPLQHRQPFTSSSPLTFLDHLPLPLSSSSPSPLSFTFQRPEPVLCSPLRFKRYRASPSYNPLPDLPLTNQFPHLDGFRFPVSSGFSPFFQPSFLESDRGISSSSPFQPKLELPSNQFYKPPQEQDIKLDIDFSDPSFQTSSGLLGDLLLEAQALASGQNSKKRTYLSLNEGNDMFDACQSFEDFPSSSLYWPSSASAPKAKEEAPDFSKFMNEDLSSLLTVIPSSNTQGHEWLNNGVPEGSNVQPSGSGMTDDNFGLDMKPVASLFPLTNTTNHNENQGCYTWDNLPGLC 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g01998 515 SUPERFAMILY Homeodomain-like 45 141 IPR009057 -
Phco11g01998 515 FunFam MYB-related transcription factor 46 99 - -
Phco11g01998 515 SMART sant 99 147 IPR001005 -
Phco11g01998 515 SMART sant 46 96 IPR001005 -
Phco11g01998 515 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 95 149 IPR017930 -
Phco11g01998 515 MobiDBLite consensus disorder prediction 158 179 - -
Phco11g01998 515 ProSiteProfiles Myb-like domain profile. 42 94 IPR001005 -
Phco11g01998 515 ProSiteProfiles Myb-like domain profile. 95 145 IPR001005 -
Phco11g01998 515 MobiDBLite consensus disorder prediction 196 236 - -
Phco11g01998 515 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 42 94 IPR017930 -
Phco11g01998 515 Pfam Myb-like DNA-binding domain 47 94 IPR001005 -
Phco11g01998 515 Pfam Myb-like DNA-binding domain 100 143 IPR001005 -
Phco11g01998 515 Gene3D - 46 99 - -
Phco11g01998 515 MobiDBLite consensus disorder prediction 160 179 - -
Phco11g01998 515 Gene3D - 102 148 - -
Phco11g01998 515 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 34 466 - -
Phco11g01998 515 CDD SANT 49 94 IPR001005 -
Phco11g01998 515 FunFam Transcription factor GAMYB 102 148 - -
Phco11g01998 515 CDD SANT 102 143 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g01998 Phco-Chr11 16328520 16330821 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Phco11g01998 Myb_DNA-binding 1e-13 CL0123