Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g01977 ATGTCGAATTTGCCCCAATCGCTGTCTATGGGTGCCGCCTTCGGTGGCGGCGGTCCACAGTCTTCGTCGAGTGGTGCCGGGTCACAGGGCTCTGGTGCCGGCAAAGATCGGAAGATGGCATCGGCGGAGCAACTGGTACTGGAACTCAGCAACCCTGAACTCCGAGAAAACGCGCTTCTGGAACTTTCCAAGAAGAGGGAGCTATTTCAAGATCTTGCTCCTTTGTTATGGAATTCTTTTGGTACTATTGCTGCACTTTTGCAGGAAATAGTGTCAATTTATCCTGTTCTTTCACCACCAAATCTTACTCCTGCACAATCAAATCGAGTGTGTAATGCTCTTGCTCTTCTTCAGTGTGTAGCATCTCACCCGGATACAAGGATGCTATTCCTCAATGCTCATATACCTTTATATCTGTACCCCTTCCTTAATACAACAAGCAAGTCAAGACCATTTGAGTACTTGAGGCTTACCAGTCTTGGTGTCATTGGTGCGTTGGTGAAGGTTGATGATACAGAAGTTATAAGTTTCCTTCTTTCAACAGAAATAATTCCTCTGTGCTTGCGCACCATGGAAATGGGCAGTGAGCTATCCAAAACAGTTGCAACATTTATTGTTCAAAAAATTCTTTTGGACGATGTTGGCTTGGACTACATTTGTACTACAGCCGAGCGCTTTTTTGCGGTAGGTAGAGTTTTGGGGAACATGGTGGCAGCTCTTGCTGAGCAACCTTCCTCTCGATTACTGAAGCATATCATTCGGTGCTATCTTCGCCTGTCAGATAATCCAAGGGCTTGTGATGCATTAAGAAGCTGTCTACCAGACATGTTAAGAGATGCTACGTTCAGCAGTTGCCTTCGTGAAGACCCCACAACTAGGAGGTGGCTACAACAATTGCTTCACAATGTTGGAGTGAATCGAGTTCCTGCACTACAAGCTGGAGGAGGGTTCGATCATATGATTGTGACCTGA 972 0.4609 MSNLPQSLSMGAAFGGGGPQSSSSGAGSQGSGAGKDRKMASAEQLVLELSNPELRENALLELSKKRELFQDLAPLLWNSFGTIAALLQEIVSIYPVLSPPNLTPAQSNRVCNALALLQCVASHPDTRMLFLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKVDDTEVISFLLSTEIIPLCLRTMEMGSELSKTVATFIVQKILLDDVGLDYICTTAERFFAVGRVLGNMVAALAEQPSSRLLKHIIRCYLRLSDNPRACDALRSCLPDMLRDATFSSCLREDPTTRRWLQQLLHNVGVNRVPALQAGGGFDHMIVT 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g01977 323 Pfam Cell differentiation family, Rcd1-like 45 303 - -
Phco11g01977 323 SUPERFAMILY ARM repeat 47 278 IPR016024 -
Phco11g01977 323 MobiDBLite consensus disorder prediction 1 38 - -
Phco11g01977 323 PANTHER UNCHARACTERIZED 38 306 IPR007216 GO:0006402|GO:0030014
Phco11g01977 323 Gene3D - 34 304 IPR011989 -
Phco11g01977 323 MobiDBLite consensus disorder prediction 16 30 - -
Phco11g01977 323 FunFam Cell differentiation protein RCD1 35 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g01977 Phco-Chr11 16121797 16135297 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Rcd1-like Phco11g01977 Rcd1 3.5e-130 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g01977 11 16121797 16135297 Phco3g00238 3 1734839 1739308 PCT