Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g01973 ATGGAAGAAGCTACCTGCAATGATGACTCTAATATTGCACCAGTTACACATTCTTCTCTGGTGTTTGATGGGAAAAGACTTGCCATGGATGAGATGGATTTCTTTGCTCAGAAGAAGAAGAAAAATGTGGTTGGTGATGATGAAATGGTGCACCAAATGGAGCTGCATGTGGATACTAGTTTAGATCTCCTCACAAAGAGTTCCCCCACCAATAGATCAACTATGGGAGAAGGATCATCGGAAGCAAAGGGTAATAGAAGAGATAATAAGTTTGCAGCTGTGCTAGCAGAACTGCACCACATGAATGCTGAAAATCAACGCTTGAGAGATCAGGTTGATCAGGTGAATGATAAGTACCATGCTCTACACAATCAGATTATGAAAATGATGGAGAAAAAACAAAAGAATGAGGGTAAGAAAGCTGATATGATTCCAAGGCCATTCTTGGATATTGGAGTTGCTATGAAGGAAGAGAGTTCGCAGCAACATTCCAAGGGAAAACAGCAAGAAAGCAAGAATCAGAAGATTTGCAGTAACAGAGATGTTACTGAGTTGGAGGCATCTGACAAAGTTATTCCAAGGTGGCTCTCAGACAGTTCTTTCAAGGATGTTGATGAAGCATCAGAAAACATGTCAATGATCAAGAAAGCTCGAGTATCAGTTCGAGCAAGATCTGTTTCTTCTATGATTTCTGATGGATGTCAATGGAGAAAGTATGGGCAGAAGATGGCAAAAGGAAATCCATGTCCAAGAGCTTATTATCGATGTTCAATGGGGACTGGTTGCCCAGTTCGGAAGCAAGTGCAAAGGAGTGCAGAAGATCAAAGTGTGTTGATCACAACATATGAAGGGCAACATAATCATGTACTCCCTCCAGCTGCCAAAGCAATGGCATCCACCACATCTGCAGCTGCATCAATGCTTCTTTCAGGATCAATGCCAAGCTCAGATGGCCTTCTACACCCAAACATACTAGAAAGTGCAACACTTCCATTTTCACAGAACTTAGCAACCCTCTCAGCTTCAGCTCCATTTCCAACCATCACTTTGGATCTCACTCAAAGTGCCACCAATACTTCCTCACAGCAGCTACCACAAGAGGCACCTCAGGATTCTCAACTCAGCCTCATTTCTCCACTTTTGGCACCAAATCTTTTTTACCACCAAATTAAGCTTTCTAGCTTACATGGCTCTCAGGGAACAGAACCTGCTTCTTTTGCTGACACAGTAAATGCAGCAACAGCTGCTATCACTACAGACCCCAAATTCAGTGCAGCTCTTATGGCAGCCATAACATCAATTATTGGAAGTTCACATCCAGTGGAGACTCAGCATTGCAATAACAAATAA 1350 0.4244 MEEATCNDDSNIAPVTHSSLVFDGKRLAMDEMDFFAQKKKKNVVGDDEMVHQMELHVDTSLDLLTKSSPTNRSTMGEGSSEAKGNRRDNKFAAVLAELHHMNAENQRLRDQVDQVNDKYHALHNQIMKMMEKKQKNEGKKADMIPRPFLDIGVAMKEESSQQHSKGKQQESKNQKICSNRDVTELEASDKVIPRWLSDSSFKDVDEASENMSMIKKARVSVRARSVSSMISDGCQWRKYGQKMAKGNPCPRAYYRCSMGTGCPVRKQVQRSAEDQSVLITTYEGQHNHVLPPAAKAMASTTSAAASMLLSGSMPSSDGLLHPNILESATLPFSQNLATLSASAPFPTITLDLTQSATNTSSQQLPQEAPQDSQLSLISPLLAPNLFYHQIKLSSLHGSQGTEPASFADTVNAATAAITTDPKFSAALMAAITSIIGSSHPVETQHCNNK 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g01973 449 Coils Coil 98 132 - -
Phco11g01973 449 ProSiteProfiles WRKY domain profile. 225 291 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco11g01973 449 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 75 444 IPR044810 GO:0003700
Phco11g01973 449 Gene3D WRKY domain 215 292 IPR036576 GO:0003700|GO:0006355|GO:0043565
Phco11g01973 449 SMART WRKY_cls 230 290 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco11g01973 449 MobiDBLite consensus disorder prediction 63 87 - -
Phco11g01973 449 FunFam probable WRKY transcription factor 31 215 292 - -
Phco11g01973 449 MobiDBLite consensus disorder prediction 156 179 - -
Phco11g01973 449 SUPERFAMILY WRKY DNA-binding domain 227 291 IPR036576 GO:0003700|GO:0006355|GO:0043565
Phco11g01973 449 Pfam WRKY DNA -binding domain 232 288 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco11g01973 449 MobiDBLite consensus disorder prediction 63 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g01973 Phco-Chr11 16076920 16081134 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Phco11g01973 WRKY 3e-24 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g01973 11 16076920 16081134 Phco3g00231 3 1682284 1685139 PCT