Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g01966 ATGGGAAGCGAAGAAGAGAGGGTTCTTGAGAACCAACTCGAACTTCAATTGCAAGAGCAAAGGGATTCTCTCTCTGCTATCGATCAAGCTCTCCTCTCTGATCCAACCAACCTTGAGCTTCTCGCGGTTCATGAGGAGCTTGTCCAGGCAATTAAGGATGCAGAAGAAGGACTTTTTCACTTAAAACGTGCACGATTGTTACAGGAAGCGGATGCAGTTCTGCATAACACTAATATTTTTGCTGAAGACGAGAAAGTGGAACTTCTTGATCCCGCAGATGTTGAATCAGAGCTGTTGGAGGAAAAATGTCATTCTGTTGGATCTAAATGTAGATTCCGGCACATAAATGGGCGCTGGTACAATGGTCAAGTGGTGCAGTTGGATAATTCAGTGGCAAAAGTTTCATTCCTTACTCCTACGTCTGAGAATATGCTGATGTGCAAGTTCTTTTTACAACAACGATGTCGATTTGGTAGTAGCTGTCGCCTATCACATGGAGTTGATGTTCACTTGTCTGCTCTTAAGAAATTTGTCCCTACAATCTGGAAGCAGTCCCTTGTCGGGTCAAGTATATGGGCAGTCTCAACTGCAAATGCAGGCACTTGGAGAGAAGCCGAGCTCGAGTCCTGGGATGAAAAGACTGAAGTTGGACAAGTTGTTTTCCGAGATGACGGTAGTACTGTGAAACTTGGTGCAGAAGAAATGGCACTGTCTGAGCATGCAGAAGTGAGTGACTCAGAGAGTGATTCCAGCTTACAGCAATCTGAGTCCAGTGACGATGAGGAGGATGAAGAATCACAAGGTTTAGGATTTCTGGAGAGTACCAACCTACAGAGAGGAGTTCAAACTGAAACTGCAAAATTTGCCACTTGGGAAAACCACACTAGAGGCATAGCTTCCAGAATGATGGCTAATATGGGGTACAGAGAAGGAATGGGTTTAGGTGTAACGGGTCAGGGAATGCTGGATCCCATACCAGTGAAGATCCTACCACCACAGCAATCCTTGGATTATGCACTTGAGTCTCATAAAGGGGAAGAGAAAGAAGACAAGGAATGCAAGAAGAAACGGAGCCGAGGTGGGAAGAGAAAACGTGACAAGAAATTTGCAGAAGCAAATCGTGCAGCAAAAGAGGAAGAGGAGTCGGCATCAGATGTCTTTGCATTGATAAACAATCAGCTGTCAATGCACAGTGAGGCTTTTGGCGGTGGATCAATGAAGAAGCAGCAAAGTAAAGGTCCTGAGGAAGGTAAAAAGGTGGATAGACGGGCACTGGTTGCTTATGAGGAAGAGGTGAAGGATTTGAAGATGAGGGTTGAAAAGCTTGAGCAAATTGTGAACGTTAATAAGAAAGAGAAGGCTGTGTATGACGCTGCCATGAGAAAATTAAATCAAACCCGCAAAGCCTTGGCAGATGCCGAAGCAGTTCATGCCTCTGCCTCAAATGCAGTTGTTAGCAAAGAAAAAGAAAAGAGATGGCTCAAGTTTTAG 1491 0.4474 MGSEEERVLENQLELQLQEQRDSLSAIDQALLSDPTNLELLAVHEELVQAIKDAEEGLFHLKRARLLQEADAVLHNTNIFAEDEKVELLDPADVESELLEEKCHSVGSKCRFRHINGRWYNGQVVQLDNSVAKVSFLTPTSENMLMCKFFLQQRCRFGSSCRLSHGVDVHLSALKKFVPTIWKQSLVGSSIWAVSTANAGTWREAELESWDEKTEVGQVVFRDDGSTVKLGAEEMALSEHAEVSDSESDSSLQQSESSDDEEDEESQGLGFLESTNLQRGVQTETAKFATWENHTRGIASRMMANMGYREGMGLGVTGQGMLDPIPVKILPPQQSLDYALESHKGEEKEDKECKKKRSRGGKRKRDKKFAEANRAAKEEEESASDVFALINNQLSMHSEAFGGGSMKKQQSKGPEEGKKVDRRALVAYEEEVKDLKMRVEKLEQIVNVNKKEKAVYDAAMRKLNQTRKALADAEAVHASASNAVVSKEKEKRWLKF 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g01966 496 SMART G-patch_5 293 339 IPR000467 GO:0003676
Phco11g01966 496 MobiDBLite consensus disorder prediction 341 356 - -
Phco11g01966 496 MobiDBLite consensus disorder prediction 254 268 - -
Phco11g01966 496 MobiDBLite consensus disorder prediction 365 382 - -
Phco11g01966 496 Pfam CCCH-type zinc finger 146 166 IPR041367 -
Phco11g01966 496 Coils Coil 425 452 - -
Phco11g01966 496 ProSiteProfiles Zinc finger C3H1-type profile. 141 168 IPR000571 GO:0046872
Phco11g01966 496 MobiDBLite consensus disorder prediction 341 382 - -
Phco11g01966 496 MobiDBLite consensus disorder prediction 399 419 - -
Phco11g01966 496 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 22 1 496 - -
Phco11g01966 496 Coils Coil 456 476 - -
Phco11g01966 496 Pfam G-patch domain 295 338 IPR000467 GO:0003676
Phco11g01966 496 Gene3D - 118 178 - -
Phco11g01966 496 SMART c3hfinal6 141 167 IPR000571 GO:0046872
Phco11g01966 496 MobiDBLite consensus disorder prediction 237 274 - -
Phco11g01966 496 ProSiteProfiles G-patch domain profile. 295 341 IPR000467 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g01966 Phco-Chr11 16017764 16023765 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Phco11g01966 G-patch 4.3e-12 CL0449