Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g01899 ATGATGCCAAGTGTTAAGCCTGATGCATCTGACAGAGACTCAGAGCCATTTGTTGAAATTGATCCAACTAGAAGATATGGCAGATACAGTGAACTGCTGGGATGTGGTGCTGTGAAAAAGGTATACAGGGCATTTGATCAAGAAGAAGGGATAGAGGTGGCTTGGAACCAAGTGAAGCTGAGGAACTTCAGTGATGACCCTGCAATGGTGGAAAGGCTTTACTCTGAGGTGAGATTGCTCAGAAGCTTGACAAACAAAAACATCATATCCCTTTACAGTGTCTGGAGGGATGAGAAGCACAACACTTTGAACTTCATCACCGAGGTCTGCACCAGTGGGAATCTGAGGGAGTACAGGAAGAAACACAGGCATGTCTCCATGAGGGCCTTGAAAAAGTGGTCCAAGCAGATTTTGGAAGGGTTGAATTACTTGCATGTGCATGACCCTTGTATCATCCACAGAGACCTCAACTGCAGTAATGTGTTTGTCAATGGGAACACTGGCCAGGTTAAGATTGGTGACTTGGGTTTGGCAGCTATTGTGGGGAAGAGCCACTCTGCACATTCAGTTCTTGGAACACCAGAATTTATGGCACCTGAGTTGTATGATGAAGACTACACTGAAATGGTAGACATATACTCATTTGGAATGTGTGTGTTGGAGATGGTAACACTAGAGATTCCATATAGTGAATGTGACAATGTTGCCAAGATATACAAGAAGGTGTCATCAGGTGTGAGACCTCAAGCCTTGAGCATGATCCAAGATCCTGAAGTGAAGGCCTTCATAGAGAGGTGTCTTGCTCAGCCAAGGGCTAGACCTTCAGCTGCAGAGTTGCTCAAGGACCCCTTCTTTGATTTGCATGATTATGAAGAAGATGATGACTCTAATGCTTCATGA 900 0.4478 MMPSVKPDASDRDSEPFVEIDPTRRYGRYSELLGCGAVKKVYRAFDQEEGIEVAWNQVKLRNFSDDPAMVERLYSEVRLLRSLTNKNIISLYSVWRDEKHNTLNFITEVCTSGNLREYRKKHRHVSMRALKKWSKQILEGLNYLHVHDPCIIHRDLNCSNVFVNGNTGQVKIGDLGLAAIVGKSHSAHSVLGTPEFMAPELYDEDYTEMVDIYSFGMCVLEMVTLEIPYSECDNVAKIYKKVSSGVRPQALSMIQDPEVKAFIERCLAQPRARPSAAELLKDPFFDLHDYEEDDDSNAS 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g01899 299 CDD STKc_WNK 25 285 - -
Phco11g01899 299 Gene3D Transferase(Phosphotransferase) domain 1 110 290 - -
Phco11g01899 299 FunFam Probable serine/threonine-protein kinase WNK1 12 108 - -
Phco11g01899 299 Pfam Protein kinase domain 30 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco11g01899 299 ProSiteProfiles Protein kinase domain profile. 27 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco11g01899 299 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 12 286 - -
Phco11g01899 299 SUPERFAMILY Protein kinase-like (PK-like) 20 286 IPR011009 -
Phco11g01899 299 Gene3D Phosphorylase Kinase; domain 1 11 108 - -
Phco11g01899 299 PIRSF TyrPK_CSF1-R 24 130 - -
Phco11g01899 299 PIRSF TyrPK_CSF1-R 118 282 - -
Phco11g01899 299 FunFam probable serine/threonine-protein kinase WNK9 110 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g01899 Phco-Chr11 15327008 15328853 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Phco11g01899 Pkinase 3.1e-52 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g01899 11 15327008 15328853 Phco11g01899 11 15327008 15328853 ECH
Phco11g01899 11 15327008 15328853 Phco3g00187 3 1356275 1358485 PCT