Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g01897 ATGCATAGAAAAGGATTCATAATTCTTTTGAGATTCATTCTCACAAGTCAATTTGGTCTCTCTTTCTCCGTGACATACATACCCTTCACAGGAAATGACTTTTTTGCCCTCTCATCTGTGCCTTCATTTCCTTCTTCTTTGACTCAGCTCTTCTCTTTCTGCTTGTCCAAGACACAAACTTTCTTTCTCTACACCGTAATGGACGCCGGCGAAGCTCACTCCGACGATCCGAATCGACCTGGGTCGAGGCCCAATTCCACCGCCGAGGCTGCTCCGGCCGGCGGCGGCGCGAGGTACAAGCTCATGTCGCCGGCGAAGCTCCCGATCTCACGCTCGCCGTGCGTCACGATTCCGCCTGGTCTCAGTCCGACGTCGTTTCTCGAGTCACCGGTGCTGCTCTCCAACATGAAGGTGGAACCTTCACCGACCACAGGATCCCTTTTTATGCTTCATCAATCAGCTCATGCTTCTGTGACTTCTGCTGCATCTGCTTCATTTCCTGTAACCACTGCATGCTTCAATACCAATACTGTTGATGATCGAAAACCCAGCTTCTTTGAGTTTAAACCGCACAGTAGATCAAATATGGTTCCTGGAGACCCTGACAATCATGCAAGTGAAAAATGTACTCAAATAGATGGTCAAGGAAAAGGTCAACCTTTTGATTCATCATTAGTGAAAAGTGAGATAGCAGTCCCTTCAAATGAATTAAGTCTATCATCACCTGTTCAAATTGTTAGCTCAGGAGCTAATGCCCGTGTTGAAGGTGATTTGGATGAACTGAACCCTAGGAGCAACATAGCAACTGGGCTTCAAGCATCACAAGTTGACAATAGAGGTAGTGGACTTTCTGTTGCACCTGAGCGAGTATCTGATGATGGATACAACTGGAGAAAGTATGGGCAGAAACATGTTAAAGGAAGTGAATTTCCACGCAGTTATTACAAATGTACACATCCTAACTGTGAAGTTAAGAAACTATTTGAACGCTCTCATGATGGGCAAATCACTGAGATAATTTACAAGGGAACACATGATCATCCGAAACCCCAGCCAAACCGGCGTTACTCAACTGGAAGTATCATGAATATGCAAGAAGATAGATCTGATAAAGCTTCTTTCCGAGATGACAAAGGATCCAACATATGTGGCCAGGTGTCTCACCCAGCTGAGCCTGACAGTACTCCAGAGCTATCGCCTGTTGCAACAAATGATGGTGATCCAGAGGGTACAGGATTTTTGTCAAACCGGAATAATGATGAGGTTGATGATGATGATCCCTTTTCAAAGCGAAGAAAAATGGAGCTTGCAAATGCTGACATTACTCCTGTAGTTAAGCCTATTAGGGAGCCACGGGTCGTTGTACAAACTCTGAGTGAGGTTGATATATTGGATGATGGTTACCGCTGGCGCAAGTATGGGCAGAAGGTGGTGAGAGGAAATCCTAACCCTAGGAGTTATTACAAATGCACTAACACGGGGTGCCCCGTTAGAAAACATGTGGAGAGGGCATCTCATGATCCGAAGGCTGTGATAACCACATATGAGGGGAAGCACAATCATGATGTGCCAACTGCAAGGAATAATAGTTGCCATGACATTGCAGGTCCAGCAAGTGCTACTGGGGGACAGACAAGAATTAGGCCAGAAGAAAGTGATACCATCAGCCTTGACCTTGGTATGGGAATTAGCCCTGTTTCGGAAAACACACCAAGCAGTCAAGGGAGAATGATGCTTTCTGAATTTGGTGACAGCCAAGCTCATACCAGCAACTCCAATTTCAAGTTTGTTCATACTTCGGGGCCGCCAGTGTACTTTGGTGTTCTAAATAACAACTCTAACCCATATGGCTCTAGAGAAAATCCAAGTGATAGTGCATCTTTAAACCATTCTGCATATCCCTGCCCTCAGAACGTGGGAAGAATACTAATGGGTCCTTAA 1941 0.4554 MHRKGFIILLRFILTSQFGLSFSVTYIPFTGNDFFALSSVPSFPSSLTQLFSFCLSKTQTFFLYTVMDAGEAHSDDPNRPGSRPNSTAEAAPAGGGARYKLMSPAKLPISRSPCVTIPPGLSPTSFLESPVLLSNMKVEPSPTTGSLFMLHQSAHASVTSAASASFPVTTACFNTNTVDDRKPSFFEFKPHSRSNMVPGDPDNHASEKCTQIDGQGKGQPFDSSLVKSEIAVPSNELSLSSPVQIVSSGANARVEGDLDELNPRSNIATGLQASQVDNRGSGLSVAPERVSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYKGTHDHPKPQPNRRYSTGSIMNMQEDRSDKASFRDDKGSNICGQVSHPAEPDSTPELSPVATNDGDPEGTGFLSNRNNDEVDDDDPFSKRRKMELANADITPVVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNTGCPVRKHVERASHDPKAVITTYEGKHNHDVPTARNNSCHDIAGPASATGGQTRIRPEESDTISLDLGMGISPVSENTPSSQGRMMLSEFGDSQAHTSNSNFKFVHTSGPPVYFGVLNNNSNPYGSRENPSDSASLNHSAYPCPQNVGRILMGP 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g01897 646 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 186 561 IPR044810 GO:0003700
Phco11g01897 646 MobiDBLite consensus disorder prediction 366 431 - -
Phco11g01897 646 MobiDBLite consensus disorder prediction 189 222 - -
Phco11g01897 646 Pfam WRKY DNA -binding domain 292 348 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco11g01897 646 Pfam WRKY DNA -binding domain 465 521 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco11g01897 646 FunFam WRKY transcription factor 33 451 517 - -
Phco11g01897 646 MobiDBLite consensus disorder prediction 73 96 - -
Phco11g01897 646 SUPERFAMILY WRKY DNA-binding domain 288 350 IPR036576 GO:0003700|GO:0006355|GO:0043565
Phco11g01897 646 Gene3D WRKY domain 284 351 IPR036576 GO:0003700|GO:0006355|GO:0043565
Phco11g01897 646 Gene3D WRKY domain 449 525 IPR036576 GO:0003700|GO:0006355|GO:0043565
Phco11g01897 646 FunFam WRKY transcription factor 281 351 - -
Phco11g01897 646 ProSiteProfiles WRKY domain profile. 459 524 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco11g01897 646 ProSiteProfiles WRKY domain profile. 286 350 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco11g01897 646 MobiDBLite consensus disorder prediction 208 222 - -
Phco11g01897 646 SUPERFAMILY WRKY DNA-binding domain 456 524 IPR036576 GO:0003700|GO:0006355|GO:0043565
Phco11g01897 646 SMART WRKY_cls 464 523 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco11g01897 646 SMART WRKY_cls 291 349 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g01897 Phco-Chr11 15294299 15299301 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Phco11g01897 WRKY 2e-25 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g01897 11 15294299 15299301 Phco11g01897 11 15294299 15299301 ECH
Phco11g01897 11 15294299 15299301 Phco3g00185 3 1333994 1339121 PCT