Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g01896 ATGCAAACATCTCAGAATCATAAAATTTCTTATGGCTCTGGTGGGTTCTATGTTGAGCCTGTGCAAAATTTGGAGTCATATTGCTTACCATCAAGTGAGAACATAGACAATTACTCTTCCTCTGATAACAGCAGCCAAACAACCTACCCTTCAGTCCAAACTTTAAACCAATATCTCACCCTTGAATCTGCTTCCACAAGCAACAGTTTCCCTTGCCAAAATTCTCCACCTGCTCTCAGTTTCTCATCAAACAATAGCCCGTTGTCAAACCTAGAGTCAAATTCATATGTGTTAAGGCCACAGCATTCTCTTGAAATTGCTAATGGCCCACCAGAGAATGATTCTTACCCGATTCTTGACCTTGATGACCTGACACATAAGATAAGAGAACTGGAAACTGCTATGCTGGAACCTAATGCAGATATGCTAGATATCTATGGTGCTATAATGCCAGGAGAAGCTGATTCAATTTTGTTAGAGGCTGAGAAGTGGAAGGAAATGATGGAGATGGTATCCAGAGGGGATTTGAAAGAGATGCTTTATACTTGTGCAAAGGCAATGGCTGTGAATGATATGGAGACAACTGAATGGATGATGTCAGAGTCGCGTAAGATGGTTTCCGTTTTGGGCAATCCAATTCAGCGGTTGGGAGCATACATTGTGGAGTCTCTTGTAGCAAGGATGGCTGTTTCAGGAAGCACAATCTACAACTCCTTGAAATGTAGTGAGCCTACTGGTAATGAACTACTTTCATACATGCATGTACTCTATGAAGTTTGTCCATATTTCAAGTTTGGATACATGTCAGCAAATGGAGCAATTGCCGAAGCTCTGAAGGACGAAAGTAAAGTCCACATAATAGACTTTCAGATTTCCCAGGGAACTCAATGGGTGAGCCTGATTCAGGCTCTTGCTCGCCGGCCCGGAGGACCACCAAATATCCGAATATCGGGTGTTGATGACTCCTTTTCATCTTATGCACGGGGAGGAGGACTTGATATTGTTGGGAAAAGGTTATCAGCACTTGCAGAGTCATGTAATGTACCCTTTGAGTTCAATGCTGTGAGAGTACCTGCTTCTCAAGTGCAACTTAAAGACCTTGAACTTCGCCCTTATGAAGCTGTGGCTGTGAACTTTGCCATTATGTTGCACCATGTGCCTGATGAAAGTGTGAACGGCCACAATCATCGTGATAGGTTGTTGAGATTGGCCAAGCACTTGTCTCCTAAAGTGGTGACTCTTGTTGAGCAAGAATTTAACACCAACAATGCACCATTCTTGCAGCGATTCGTTGAGACAATGAACTACTACTTGGCTGTTTTTGATTCAATTGATGCGGCTCTTCCAAGGGAGCACAAAGAGAGGATTAATGTGGAGCAGCACTGTTTGGCTCGTGAAGTTGTCAACTTAATAGCATGTGAAGGAGAAGAAAGAGTTGAACGTCATGAGCTTCTGAATAAGTGGAGAATGCGTTTCACAGAAGCTGGATTTGCGCCTTATCCACTGAACTCCGTTATCAATTCTTCAATCAAGGATCTTCTCCAGACCTACCATGGTCATTACACTCTGGAAGAGAAAGATGGTGCACTATTTCTTGGTTGGAAGAATCAAGTTCTTATTGCCTCTTGTGCTTGGAGATAA 1641 0.4284 MQTSQNHKISYGSGGFYVEPVQNLESYCLPSSENIDNYSSSDNSSQTTYPSVQTLNQYLTLESASTSNSFPCQNSPPALSFSSNNSPLSNLESNSYVLRPQHSLEIANGPPENDSYPILDLDDLTHKIRELETAMLEPNADMLDIYGAIMPGEADSILLEAEKWKEMMEMVSRGDLKEMLYTCAKAMAVNDMETTEWMMSESRKMVSVLGNPIQRLGAYIVESLVARMAVSGSTIYNSLKCSEPTGNELLSYMHVLYEVCPYFKFGYMSANGAIAEALKDESKVHIIDFQISQGTQWVSLIQALARRPGGPPNIRISGVDDSFSSYARGGGLDIVGKRLSALAESCNVPFEFNAVRVPASQVQLKDLELRPYEAVAVNFAIMLHHVPDESVNGHNHRDRLLRLAKHLSPKVVTLVEQEFNTNNAPFLQRFVETMNYYLAVFDSIDAALPREHKERINVEQHCLAREVVNLIACEGEERVERHELLNKWRMRFTEAGFAPYPLNSVINSSIKDLLQTYHGHYTLEEKDGALFLGWKNQVLIASCAWR 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g01896 546 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 132 541 IPR005202 -
Phco11g01896 546 Pfam GRAS domain family 176 546 IPR005202 -
Phco11g01896 546 MobiDBLite consensus disorder prediction 66 85 - -
Phco11g01896 546 ProSiteProfiles GRAS family profile. 167 546 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g01896 Phco-Chr11 15290324 15291964 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Phco11g01896 GRAS 2.6e-129 CL0063
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g01896 11 15290324 15291964 Phco3g00183 3 1328409 1330025 PCT