Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g01861 ATGGCGGACTCCGACAACGACTCCGGCGGCACGCACAACGCCGGCAAGGGCAGCGAGATGTCGCCACGGGAGCAGGACCGGTTTCTGCCGATCGCGAACGTGAGTCGCATCATGAAGAAGGCGCTTCCGGCGAACGCGAAGATCTCTAAGGACGCGAAGGAGACAGTGCAGGAGTGCGTGTCGGAGTTCATCAGCTTCATCACAGGCGAAGCCTCCGACAAGTGCCAGCGCGAGAAGCGAAAGACGATCAACGGCGACGATCTCCTGTGGGCGATGACGACTCTGGGCTTCGAAGACTACGTAGAGCCTCTGAAGGTCTATCTGCAGCGCTTTAGAGAAATGGAAGGAGAGAAGACCGTGGCGGCGCGTGACAAGGACGCGCCTCTTGCTTCCAATGCTACCAACAGTGCCTACGAGAGTGGTAGTTATGGTGCTGGTGGAATCATGATGCATCAGGGACACGTGTACAGTTCTGGTGGGTTCCATCAAGTGGCTGGCGGTGGTGCTGCTATTAAGGGTGGGCCTGCGTATCCTGGGCCTGGATCCAATGCGAGTAGGCCCAGATAG 567 0.5838 MADSDNDSGGTHNAGKGSEMSPREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREMEGEKTVAARDKDAPLASNATNSAYESGSYGAGGIMMHQGHVYSSGGFHQVAGGGAAIKGGPAYPGPGSNASRPR 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g01861 188 MobiDBLite consensus disorder prediction 1 26 - -
Phco11g01861 188 MobiDBLite consensus disorder prediction 1 15 - -
Phco11g01861 188 ProSitePatterns NF-YB/HAP3 subunit signature. 59 75 IPR003956 GO:0005634|GO:0006355|GO:0043565
Phco11g01861 188 PRINTS CCAAT-binding transcription factor subunit A signature 94 112 - -
Phco11g01861 188 PRINTS CCAAT-binding transcription factor subunit A signature 56 74 - -
Phco11g01861 188 PRINTS CCAAT-binding transcription factor subunit A signature 75 93 - -
Phco11g01861 188 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 6 131 IPR027113 GO:0001228|GO:0006355|GO:0016602
Phco11g01861 188 SUPERFAMILY Histone-fold 25 127 IPR009072 GO:0046982
Phco11g01861 188 Gene3D Histone, subunit A 16 140 IPR009072 GO:0046982
Phco11g01861 188 FunFam Nuclear transcription factor Y subunit B-3 17 141 - -
Phco11g01861 188 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 28 92 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g01861 Phco-Chr11 14941734 14942300 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Phco11g01861 CBFD_NFYB_HMF 1.7e-27 CL0012