Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g01804 ATGGGCACTAGGCGCCCTCCCTCCAGCATAAAGAATTCAGCATGGAAGATTGATGAATTCAAGGTTCTGCTGTTCTTCCTGTTAAGACGTAGTGGGTCTCTTTTAGTAAGCATAGTAACAAGGAAGATTGATGAAGAAGAATTTTATGGAAGAGTGAAACGCCGCACGAAAAATAATAGAGACATGGGGCGTATTCCATGCTGTGAGAAGGACAACGTGAAAAGAGGACAGTGGACACCTGAGGAAGATCACAAACTCTCCTCCTACATTGCACAACATGGCACTCGCAACTGGCGTCTCATTCCCAAGAATGCTGGCCTCCAGAGATGTGGAAAGAGCTGCAGGCTAAGGTGGACTAATTACCTTCGTCCTGATCTCAAACACGGCCAATTCTCGGATTCGGAAGAGCAAACCATTGTAAAGCTTCATTCAGTTTTTGGTAACAGATGGTCACTGATAGCTGCCCAGCTGCCAGGACGCACAGACAATGATGTCAAAAACCACTGGAACACCAAGCTGAAGAAGAAACTGTCAGGCATGGGTATAGACCCTGTAACCCACAAGCCATTTTCCCATCTCATGGCTGAAATTGCTACGACATTGGCACCCCCACAGGCAGCTCACTTAGCTGAAGCAGCCCTTGGCTGTTTCAAAGATGAGGTGCTCCACCTTCTTACCAAGAAGCCAATTAACTTCCAGGGCCACCATTCCGCTGCATCACTGGGGAATAACTTCACTGATTATATTAATTGTAAGCCAGATGAAAAGGACGCAACTGTTGAGAAGATCAAGTTTGACCTATCGAAGGCCATGCAACAAGAACCTGAAATGATGCCCTCAAATAAACCTTGGGACTCCACTGCAACTACATCTGCATGTTTTGCGATGCCATATAGTGTTTTCCCTACAATATCTGGTTATCAATTCTCTCCAGCATCTTTCGGCAATAAAGGGGATGCATCTCCATGGAGCCAAAGTGTATGCACTGGAAGCACATGCACAGCCATGGATCAGCAGAGCCAATTGCATGAAAAACTTGAAGAGGAAAATGGTGATGATTCTGAGGCTACGAAGGGAATTAGAAATCTATCCAATATATTCAACTCAGATTGTGTCGTGTGGGATCTACCGGCTGATGACTTAATTAACCCCATGGTTTAA 1161 0.4539 MGTRRPPSSIKNSAWKIDEFKVLLFFLLRRSGSLLVSIVTRKIDEEEFYGRVKRRTKNNRDMGRIPCCEKDNVKRGQWTPEEDHKLSSYIAQHGTRNWRLIPKNAGLQRCGKSCRLRWTNYLRPDLKHGQFSDSEEQTIVKLHSVFGNRWSLIAAQLPGRTDNDVKNHWNTKLKKKLSGMGIDPVTHKPFSHLMAEIATTLAPPQAAHLAEAALGCFKDEVLHLLTKKPINFQGHHSAASLGNNFTDYINCKPDEKDATVEKIKFDLSKAMQQEPEMMPSNKPWDSTATTSACFAMPYSVFPTISGYQFSPASFGNKGDASPWSQSVCTGSTCTAMDQQSQLHEKLEEENGDDSEATKGIRNLSNIFNSDCVVWDLPADDLINPMV 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g01804 386 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 127 177 IPR017930 -
Phco11g01804 386 ProSiteProfiles Myb-like domain profile. 123 173 IPR001005 -
Phco11g01804 386 CDD SANT 78 122 IPR001005 -
Phco11g01804 386 SMART sant 127 175 IPR001005 -
Phco11g01804 386 SMART sant 74 124 IPR001005 -
Phco11g01804 386 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 70 126 IPR017930 -
Phco11g01804 386 PANTHER F14D16.11-RELATED 62 384 - -
Phco11g01804 386 Gene3D - 129 189 - -
Phco11g01804 386 ProSiteProfiles Myb-like domain profile. 70 122 IPR001005 -
Phco11g01804 386 SUPERFAMILY Homeodomain-like 72 169 IPR009057 -
Phco11g01804 386 Gene3D - 75 127 - -
Phco11g01804 386 Pfam Myb-like DNA-binding domain 75 122 IPR001005 -
Phco11g01804 386 Pfam Myb-like DNA-binding domain 129 171 IPR001005 -
Phco11g01804 386 FunFam Transcription factor RAX3 68 128 - -
Phco11g01804 386 FunFam transcription factor MYB80 130 190 - -
Phco11g01804 386 CDD SANT 131 173 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g01804 Phco-Chr11 14413042 14415739 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Phco11g01804 Myb_DNA-binding 1.9e-15 CL0123