Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g01797 ATGTGGTCCCCACACAGAGGCCACGCGTTTCGCGGATTTGTGCTGCTCAAGTGCGTGTCACGTGGGCCACATTTTTCTTTTGTTGGGTTCCTCTCAAGGGCCTTGATAACCTCACCCGCACCCCTCACCTGCGTTTCTCACAACGCACCCTCTCCCGCCACCGGTGCTGCCAGTTTCCCTCCTCCACGTGTCCTTGCTGACCCCACAGAGACAGAGAGAGATAGAGAGAGAGAGGAATCAAGACAGCTCCTTTTGAATTTTCAATCAGAATCTGAGGACCCAAAATCTAGGGTTTTCTGTTCTTTCTCTTGTTGGATAGCATATGTTGTTGATGGATCTGTAAACATGCAGTCCAAGTCTGAAACTGCAAATCGACTGAGGTCAGATCCTCATTCCTTTCAACCTGGAAGTGTTTATTCCGAGCCTTGGTGGCGTGGTATTGGTTATAATCCCTTGGCCCAAACAATGGCTGGGGCTAATGCATCCAATTCGTCATCTCTTGAATGCCCTAATGGTGATTCTGAATCCAATGAAGAAGGCCAGTCTTTGTCCAATAGCGGGATGAATGAGGAAGATGATGATGCCACTAAAGATTCGCAGCCTGCTGCTCCTAACGAACCAGGGAATTATGGGCAAGAACAGCAAGGGATCCAGCATACTGCATCATCTGCACCATCCATGCGTGAAGAATGCCTTACTCAGACACCACAGCTGGAACTTGTTGGTCATTCAATTGCATGTGCTACAAATCCTTATCAAGATCCGTATTATGGGGGCATGATGGCAGTTTATGGTCACCAGCAGTTGGGATATCCTCCTTTTATAGGAATGCCTCATGCCAGGATGCCTTTGCCACTTGAGATGGCTCAAGAGCCTGTATATGTGAATGCCAAACAGTACCAAGGAATTCTGAGGCGAAGACAAGCCCGTGCTAAAGCAGAACTTGAAAGGAAGCTAATAAAATCTAGAAAGCCATACCTTCACGAGTCTCGGCACCAGCATGCTCTGAGAAGGGCAAGGGGTACCGGAGGACGATTTGCAAAGAAATCTGATGCTGAGGGCTCAAACAACTCAGGCAAGGAAAAGGATAATGGTACTGATTCTGTCCTATCATCACAATCAATTAGTTCATCTGGTTCTGAGCCTTTGCATTCTGACTCTGCGGAAACCTGGAATTCTCCTAACATGCAACAAGATGCAAGAGCAGCAAAAGTACACAACAGATTCGAAGCACCTGGTTACCAAAATGGCAGTGGCGCTTACCATAATCATCACGGTTTGCAATCTTCAGTGTATCATTCATCCTCAGGTGAAAGAGTGGAGGAAGGGGACTGTTCAGGTCAGCAACTAAACCACAATTGA 1362 0.4736 MWSPHRGHAFRGFVLLKCVSRGPHFSFVGFLSRALITSPAPLTCVSHNAPSPATGAASFPPPRVLADPTETERDREREESRQLLLNFQSESEDPKSRVFCSFSCWIAYVVDGSVNMQSKSETANRLRSDPHSFQPGSVYSEPWWRGIGYNPLAQTMAGANASNSSSLECPNGDSESNEEGQSLSNSGMNEEDDDATKDSQPAAPNEPGNYGQEQQGIQHTASSAPSMREECLTQTPQLELVGHSIACATNPYQDPYYGGMMAVYGHQQLGYPPFIGMPHARMPLPLEMAQEPVYVNAKQYQGILRRRQARAKAELERKLIKSRKPYLHESRHQHALRRARGTGGRFAKKSDAEGSNNSGKEKDNGTDSVLSSQSISSSGSEPLHSDSAETWNSPNMQQDARAAKVHNRFEAPGYQNGSGAYHNHHGLQSSVYHSSSGERVEEGDCSGQQLNHN 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g01797 453 ProSiteProfiles NF-YA/HAP2 family profile. 289 349 IPR001289 GO:0003700|GO:0006355
Phco11g01797 453 MobiDBLite consensus disorder prediction 421 436 - -
Phco11g01797 453 MobiDBLite consensus disorder prediction 121 140 - -
Phco11g01797 453 MobiDBLite consensus disorder prediction 121 135 - -
Phco11g01797 453 MobiDBLite consensus disorder prediction 324 343 - -
Phco11g01797 453 MobiDBLite consensus disorder prediction 51 80 - -
Phco11g01797 453 MobiDBLite consensus disorder prediction 202 231 - -
Phco11g01797 453 MobiDBLite consensus disorder prediction 361 400 - -
Phco11g01797 453 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 291 346 IPR001289 GO:0003700|GO:0006355
Phco11g01797 453 MobiDBLite consensus disorder prediction 324 453 - -
Phco11g01797 453 Gene3D - 289 351 - -
Phco11g01797 453 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 128 402 IPR001289 GO:0003700|GO:0006355
Phco11g01797 453 ProSitePatterns NF-YA/HAP2 subunit signature. 294 314 IPR018362 GO:0003677|GO:0016602
Phco11g01797 453 SMART cbf3 288 349 IPR001289 GO:0003700|GO:0006355
Phco11g01797 453 MobiDBLite consensus disorder prediction 160 189 - -
Phco11g01797 453 PRINTS CCAAT-binding transcription factor subunit B signature 292 314 IPR001289 GO:0003700|GO:0006355
Phco11g01797 453 PRINTS CCAAT-binding transcription factor subunit B signature 323 346 IPR001289 GO:0003700|GO:0006355
Phco11g01797 453 MobiDBLite consensus disorder prediction 160 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g01797 Phco-Chr11 14337198 14341333 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Phco11g01797 CBFB_NFYA 7.6e-26 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g01797 11 14337198 14341333 Phco11g01797 11 14337198 14341333 ECH
Phco11g01797 11 14337198 14341333 Phco3g00110 3 721868 723800 PCT