Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g01789 ATGGAAGTGTTGAGTGAGGAATGGTGGAAAGAGTTGAATGCTTTGGTTTTGCAAGCGTTCCCTAATGGTCTTCCAATAATGCCGGAAACAACCTCCTTCTCCGGTCACCCTCATCAAGACGTTACGGAAGCTCCTTTAGTGTTGTCACCGTCTCAAACATCCCAACAGCGTGGCATCCAGGTTCAGTCCACTAAACGAAAAAGAATTACTTGGACCATGGAAGAGCATAGGCTGTTTTTGGAAGGACTTGACATATACGGAAGAGGATACTGGAAAAAGATTTCGAATCACATTCAAACAAAAGATGCAACTCAAGTGGCGAGTCATGCACAAAAACATTTTATGCGTAACAATATATCCCAAGAGCAAAAGAAAAGGAAAAGCATTTATGACGTGGCGTTAAGTCAACCAATGCAAGTGCAAGAAGGGATACACTTCAATCCTCCTATCAACATGCCTCATCCAGAACATCAAAATCTTGTTAATATGTCTCATCAAATACCACCAATGATGAACAATGTAGTATATCCTACACAATTTCATGAGATGCAATCAAGATCGAGATGA 567 0.4092 MEVLSEEWWKELNALVLQAFPNGLPIMPETTSFSGHPHQDVTEAPLVLSPSQTSQQRGIQVQSTKRKRITWTMEEHRLFLEGLDIYGRGYWKKISNHIQTKDATQVASHAQKHFMRNNISQEQKKRKSIYDVALSQPMQVQEGIHFNPPINMPHPEHQNLVNMSHQIPPMMNNVVYPTQFHEMQSRSR 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g01789 188 SUPERFAMILY Homeodomain-like 64 116 IPR009057 -
Phco11g01789 188 SMART sant 67 116 IPR001005 -
Phco11g01789 188 Pfam Myb-like DNA-binding domain 70 113 IPR001005 -
Phco11g01789 188 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 118 IPR017930 -
Phco11g01789 188 CDD SANT 70 114 IPR001005 -
Phco11g01789 188 ProSiteProfiles Myb-like domain profile. 63 114 IPR001005 -
Phco11g01789 188 NCBIfam myb-like DNA-binding domain, SHAQKYF class 67 116 IPR006447 GO:0003677
Phco11g01789 188 ProSiteProfiles SANT domain profile. 71 118 IPR017884 -
Phco11g01789 188 PANTHER TRANSCRIPTION FACTOR KUA1 60 163 - -
Phco11g01789 188 Gene3D - 69 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g01789 Phco-Chr11 14232844 14233508 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Phco11g01789 Myb_DNA-binding 6e-10 CL0123