Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g01760 ATGAAAAGTATAGGAGGAGGTGGTGCCATTATTCCAGTTAATGGATGTCCAAATATAAGGGTCTCTAACCCCTCCAAGTGTTCTGTTGGTCCTCCTTTGACAGCCATAGAAAGGTTTTTGTGGGCACAACAAAGTCATTCTACTCAGCAACAGCCACAGAATGTTGTAAACAAAATCCATACAAGTGCATTGGATGGTTTTGGCGGCTCAACCTACAACATTGTGTGGCATAATGGTGCTAGGGAAGTGAACTTTGTTGAACAACTTTTAGCAAATGAAGTGGCTCTGAATTGGACACAACAAGTCCCTCCACTGTGCTTGAAGGAAGATTTACATGTGTCAGGGAAGAACCCAAAAAGGGTGGGACGCAGACCTAAGGAAGGGTCTTCTGTGCCTCTGATCAAAGGCCAGTGGACTGAAGAAGAAGACAGGAAACTGGTAAAGTTGGTGAAGCAACATGGTACAGGCAAATGGTCTCAGATAGCTGAAAAGTTGGATGGAAGGGCTGGGAAGCAGTGTCGAGAGAGATGGCATAATCATCTGCGCCCTGATATTAAGAAAGATGCTTGGAGTGAAGAAGAAGAAAGGATATTAGTCCAATATCATGCCAAGCTTGGAAACCGCTGGGCAGAGATTGCAAAGCAAATGAAAGGAAGAACTGAAAATGCCATAAAAAACCATTGGAATGCCACTAAGAGGAGACAAAACTCAAGAAGAAAGAACAAAAGAGCAAGAATCGCAAATGGAAAGCCATTGTCCTCTATTCTGCAGGACTACATCAAAAGTGTGACTCTCACCAACACTTCAACTCCCTCTGTGAAACAAACATTAGCACCCCAACACTTGGCTGATATTGTTGTTACCAATGACAATTTCTCACTAATGTCTGAGTCCTATGATTATGAGATGTTCTTCATGCAACAACTTTTGGATGAGAATAATGTCATGCTTGAATCTGTCAAGCAGACCAAGAATATGAATAGCTCTTCTGCAGCCTTTGATGGTTATCATAATCAAACTAGTAACAATAGTCAGTTTCTCACTGAAGTCACTCAGTCAGGGTCTGTTCATTCCAACCTAACAAACTCCCACATGTCCTTCGATGAGAGTCCTTTCCACTCTAAAAGGACTCCTACTGCTGTCAGCTACCTTGATTTTGATGTCTGTCTCTCTCATTTACATAATGGAACTTCTGGTTCATTATTTTTCAACAATAATGGGATTCACAACCAGAACATGGAGTTGCATTTGGGGAAGCAAGATTGGTTACTTGGAAAGAGAGATTGGGATGTAGTAGAGTCGGTTTCTTCTACTTGTCAGTTTTTGCACCAGTAA 1335 0.4187 MKSIGGGGAIIPVNGCPNIRVSNPSKCSVGPPLTAIERFLWAQQSHSTQQQPQNVVNKIHTSALDGFGGSTYNIVWHNGAREVNFVEQLLANEVALNWTQQVPPLCLKEDLHVSGKNPKRVGRRPKEGSSVPLIKGQWTEEEDRKLVKLVKQHGTGKWSQIAEKLDGRAGKQCRERWHNHLRPDIKKDAWSEEEERILVQYHAKLGNRWAEIAKQMKGRTENAIKNHWNATKRRQNSRRKNKRARIANGKPLSSILQDYIKSVTLTNTSTPSVKQTLAPQHLADIVVTNDNFSLMSESYDYEMFFMQQLLDENNVMLESVKQTKNMNSSSAAFDGYHNQTSNNSQFLTEVTQSGSVHSNLTNSHMSFDESPFHSKRTPTAVSYLDFDVCLSHLHNGTSGSLFFNNNGIHNQNMELHLGKQDWLLGKRDWDVVESVSSTCQFLHQ 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g01760 444 CDD SANT 138 181 IPR001005 -
Phco11g01760 444 Gene3D - 134 186 - -
Phco11g01760 444 ProSiteProfiles Myb-like domain profile. 182 232 IPR001005 -
Phco11g01760 444 SMART sant 186 234 IPR001005 -
Phco11g01760 444 SMART sant 134 183 IPR001005 -
Phco11g01760 444 SUPERFAMILY Homeodomain-like 132 228 IPR009057 -
Phco11g01760 444 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 130 185 IPR017930 -
Phco11g01760 444 ProSiteProfiles Myb-like domain profile. 135 181 IPR001005 -
Phco11g01760 444 PANTHER MYB PROTEIN-RELATED 120 318 - -
Phco11g01760 444 FunFam Transcriptional activator Myb isoform A 134 187 - -
Phco11g01760 444 CDD SANT 189 232 IPR001005 -
Phco11g01760 444 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 186 236 IPR017930 -
Phco11g01760 444 Pfam Myb-like DNA-binding domain 138 195 - -
Phco11g01760 444 Gene3D - 189 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g01760 Phco-Chr11 13870711 13873443 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Phco11g01760 Myb_DNA-bind_6 2.6e-20 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g01760 11 13870711 13873443 Phco3g00313 3 2211299 2215384 PCT