Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g01749 ATGGAGATCCTCCCTCCTGCCTCACCTTACATGTACAACTCCAATTGGCTTTTGGATGATAACAGGAGCAACACCAAATGGACCCCTGCAGAGAACAAGCTGTTTGAGAATGCTCTTGCAGTTTATGATAAGGACACCCCGGATCGGTGGTACAAGGTGGCTGAGATGATACCAGGAAAGACAGTTATGGATGTGGTGAAGCAGTACAAGGAATTGGAAGCAGATGTTTGTAAAATAGAAGCTGGCTTGGTCCCGATTCCAGGCTACAGTACCACCACCTCACCCTTCACCCTAGACTGGGTGAATACTCCTGGCTACGATGGCTTCAAAGGCCTCACTGCCAAGAGATCCTCCTCTGGCAGACCTCCTGAGCAGGAAAGGAAAAAAGGTGTGCCATGGACTGAAGAGGAACACAAATTGTTTCTACTGGGGCTGAAGAAGTATGGCAAAGGTGATTGGAGAAACATTTCACGCAATTTTGTGATTACTCGAACGCCAACTCAAGTTGCTAGTCATGCGCAGAAGTACTTCATCAGGCAACTTTCAGGAGGCAAAGACAAGAGGAGGGCTAGCATCCATGATATAACAACAGTGAATCTCACGGAAACCTCCAGAACTTCTTCAGAAGACAGCAAAAGATCCACTTCACCACGGCATTCTGTGATGCTCTCACACCAGCAGCCAATTTCCAGTGGTGCCTCATCAGGAGTGAATTTCCAATGGAGGAATCAGTCAAATGCAGGAGTGGCTATGGCTCTGAATCCTGCACATGAACAAGTGTTCGTATCCCCTTATGGCCTTAACTCATATGGGTTTAAGGTGCAGGGCCAAAGTCTGCACAGAAGTCCTCTTCATGAGTCTTCTTACTTAGGACCTCAGACACCAAACATGGTTTTCCAAATGCAGCCCTCCCAACACTATTCCCATGCATGA 933 0.4748 MEILPPASPYMYNSNWLLDDNRSNTKWTPAENKLFENALAVYDKDTPDRWYKVAEMIPGKTVMDVVKQYKELEADVCKIEAGLVPIPGYSTTTSPFTLDWVNTPGYDGFKGLTAKRSSSGRPPEQERKKGVPWTEEEHKLFLLGLKKYGKGDWRNISRNFVITRTPTQVASHAQKYFIRQLSGGKDKRRASIHDITTVNLTETSRTSSEDSKRSTSPRHSVMLSHQQPISSGASSGVNFQWRNQSNAGVAMALNPAHEQVFVSPYGLNSYGFKVQGQSLHRSPLHESSYLGPQTPNMVFQMQPSQHYSHA 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g01749 310 ProSiteProfiles SANT domain profile. 133 181 IPR017884 -
Phco11g01749 310 CDD SANT 26 72 IPR001005 -
Phco11g01749 310 FunFam Transcription factor SRM1 19 86 - -
Phco11g01749 310 ProSiteProfiles Myb-like domain profile. 19 73 IPR001005 -
Phco11g01749 310 Pfam Myb-like DNA-binding domain 132 177 IPR001005 -
Phco11g01749 310 MobiDBLite consensus disorder prediction 113 132 - -
Phco11g01749 310 SUPERFAMILY Homeodomain-like 25 80 IPR009057 -
Phco11g01749 310 NCBIfam myb-like DNA-binding domain, SHAQKYF class 128 180 IPR006447 GO:0003677
Phco11g01749 310 Gene3D - 131 181 - -
Phco11g01749 310 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 125 181 IPR017930 -
Phco11g01749 310 MobiDBLite consensus disorder prediction 217 236 - -
Phco11g01749 310 MobiDBLite consensus disorder prediction 200 236 - -
Phco11g01749 310 FunFam transcription factor MYB1R1 131 182 - -
Phco11g01749 310 SUPERFAMILY Homeodomain-like 126 180 IPR009057 -
Phco11g01749 310 Gene3D - 19 86 - -
Phco11g01749 310 ProSiteProfiles Myb-like domain profile. 125 177 IPR001005 -
Phco11g01749 310 SMART sant 23 75 IPR001005 -
Phco11g01749 310 SMART sant 129 179 IPR001005 -
Phco11g01749 310 CDD SANT 132 177 IPR001005 -
Phco11g01749 310 ProSiteProfiles SANT domain profile. 22 72 IPR017884 -
Phco11g01749 310 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 20 255 IPR043363 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g01749 Phco-Chr11 13767282 13768596 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Phco11g01749 Myb_DNA-binding 1.5e-12 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g01749 11 13767282 13768596 Phco11g01749 11 13767282 13768596 ECH