Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g01723 ATGACACCACCCTTCACTCTCTCCCTCTCCCTCTTCGCCGTTTTCTCTATAACCGCCGTGCACGGCCTCGGCTCCGCCGCCACCATCGCCGTCACGTACGGCACTGCCACCGTGTGCGGTGTCGTCGCCGGGGAGCTCCACCACCGCATTCAGTGCTCCCGGGACGGCAGGCGCGTCCCTTTCACGCTCCCCAACGCCTCCTTTGAGAGCATATCCGGCGGCAGGAGCTTCTTCTGCGGCCTGCGCTCCGGCGGGTGGAGCCTCCACTGCTGGGACACCGCCGCCGCAGACGGTGCGTTCTGCCCCAAGAGGGTCTTCCACAGCGACGTGGTGCAGTTGGCCGACGTGGCTGTTGGTGATTCCCAGGTGTGCGCGAGGGAGGTGCAATCCGGTGTGGTGAGGTGCTGGAGAGGAAACGGGAGGATGGAGTTTGTTTCTCCCTCGGAAAGCTTAAGGTTTCGAAGTGTCACATGTGGTCGTGGTTTTTCATGTGGGATATTGAGAGAGAGCGGGAGGGTTGTCTGCTGGGGTGGTGGTGATGAGGCGGATGCATATATTAGTGGTGAGATTCAAAGAAAGTTTGAGAATATTTCTATGACGAGTTTGGTTGCTGGGGTGTCTCATGCATGTGGTTTGACTCTTCATGGGGCTTTGGTTTGTGGAGGGAACAATAGTTCAGGTCAACTTGGAAACAGTGTTTTTTTAGGTTCTTTGGATTTTTCGGGTCTTGCTCTCGGAGACGGTTTCACTTGTGGCATTAGGCGGAGGAATGGGGTTGTTGTGTGTTGGGGTGGTGGTTTTGATAGTGATGTGGTGAAGGGTGTTTCTTTTGAGTCTCTTGTTGCTGGTTTGGATTATGTTTGTGGGTTGATGACTGGGAATTTGTCTGTGGTTTGTTGGGGTGGTAAGGGTGGGTTTGATGTGCCTAATGAGATTCCATTGGGAGTGATTCTCCCGGCTCCTTGTGTTGAGGATGGATGTGGTAGCTCTTGTGGTATATATCCTGATTCTGATGCTCTTTGTCATGGGTCTGGGAGTATTTGTTATGCTTGCCACACTGAGGTTCCACTGGCTGTGCCATTGTTTCCACCAGAATCATCACAAGTGTCTTCTTCACATGAAGGAAGAAAGTTGAAGGAGTTTGTGGTGTTTATGGTTGTTGGATCAGTTGGGGCTTTTGCCGGTCTATGTACTATTGTTTATTTCCTCTGGTTTGGTGCAAAGAGGGTTTTGGTGAGAAGAGAAGTAAGTAATAGTTCTGTGAAGCCTACAAGCTCAGAGAGTGATGCCTATGTGGATATAATCCCAATGCCTAATGTTGGTTCAAATGGGACAACCTTTAGAACTTTTTCTAGTAAAAGCCATGGGTCAAGAAGATTGAGGAGGCATAGGAGTGGTTCATCATCGAAGCATGTGGACAGGACTGAGAGTTTCTCATTGCGTGAACTGGCAACAGCCACTGACAATTTCTCATTGCATAATAAGATAGGTGCTGGTAGCTTCGGCAGTGTTTACAAAGGCATGCTAGGAGATGGTCGTGAAGTGGCTATTAAAAGAGGAGATACTAGTACTATGAAGAAGAAATTTCAGGAGAAAGAAATTGCTTTTGATTCTGAACTGGCCATGCTGTCCCGGCTTCACCACAAGCATTTGGTGAGGCTAATTGGGTTCTGCGAGGAGAATGATGAGAGGCTTTTGGTCTATGAGTACATGAGCAATGGCTCACTTTATGACCATTTGCATGACAAAAACAATATTGAGAAGAGTAGCAGCATTTTAAATTCTTGGAAGATGAGGATCAAGGTTGCATTGGGTGCTGCTAGGGGAATTGAGTACATTCACAACTATGCTGTGCCACCCATTATTCACAGGGATATCAAGTCATCAAATATACTTTTGGACTCAAACTGGAATGCCAGAGTATCTGACTTTGGATTGTCACTAATTTGGCCCGAGACTGAGCAAGAATTGATGTCCACCAAGGCAGTTGGAACTGTTGGCTACATAGACCCTGAGTACTATGTGTTGAATGTGCTAACTACAAAGAGTGATGTGTATGGTTTAGGAGTGGTGATGCTGGAGCTTCTGACAGGAAAGAGAGCTGTGTTCAAAACTGAAGATGGGTCAAGCCCTATAGGGGTAGTGGAACACACAGGTCCAAAGATAGCATCAGGAGAGCTTTGGAGTGTGTTGGATTACAGAGTTGGACAGCCAGAAGTAAATGAGGTTGAGTCCCTTGAGATCATGGCTTACACTGCTATGCACTGTGTGAACATGGAGGGAAAAGAGAGGCCAGAAATGACTGACATAGTTGCTAACTTGGAGAGGGCATTGGCTTTCATTGAAGGCAGCCCTACTAGCATCTCCCTAGCATCATTCTCTGCCCCTCTTGAATGA 2397 0.4835 MTPPFTLSLSLFAVFSITAVHGLGSAATIAVTYGTATVCGVVAGELHHRIQCSRDGRRVPFTLPNASFESISGGRSFFCGLRSGGWSLHCWDTAAADGAFCPKRVFHSDVVQLADVAVGDSQVCAREVQSGVVRCWRGNGRMEFVSPSESLRFRSVTCGRGFSCGILRESGRVVCWGGGDEADAYISGEIQRKFENISMTSLVAGVSHACGLTLHGALVCGGNNSSGQLGNSVFLGSLDFSGLALGDGFTCGIRRRNGVVVCWGGGFDSDVVKGVSFESLVAGLDYVCGLMTGNLSVVCWGGKGGFDVPNEIPLGVILPAPCVEDGCGSSCGIYPDSDALCHGSGSICYACHTEVPLAVPLFPPESSQVSSSHEGRKLKEFVVFMVVGSVGAFAGLCTIVYFLWFGAKRVLVRREVSNSSVKPTSSESDAYVDIIPMPNVGSNGTTFRTFSSKSHGSRRLRRHRSGSSSKHVDRTESFSLRELATATDNFSLHNKIGAGSFGSVYKGMLGDGREVAIKRGDTSTMKKKFQEKEIAFDSELAMLSRLHHKHLVRLIGFCEENDERLLVYEYMSNGSLYDHLHDKNNIEKSSSILNSWKMRIKVALGAARGIEYIHNYAVPPIIHRDIKSSNILLDSNWNARVSDFGLSLIWPETEQELMSTKAVGTVGYIDPEYYVLNVLTTKSDVYGLGVVMLELLTGKRAVFKTEDGSSPIGVVEHTGPKIASGELWSVLDYRVGQPEVNEVESLEIMAYTAMHCVNMEGKERPEMTDIVANLERALAFIEGSPTSISLASFSAPLE 798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g01723 798 Gene3D Phosphorylase Kinase; domain 1 451 570 - -
Phco11g01723 798 FunFam Somatic embryogenesis receptor kinase 1 461 570 - -
Phco11g01723 798 CDD STKc_IRAK 496 776 - -
Phco11g01723 798 Pfam Regulator of chromosome condensation (RCC1) repeat 154 178 - -
Phco11g01723 798 Pfam Protein kinase domain 491 710 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco11g01723 798 Gene3D - 115 358 IPR009091 -
Phco11g01723 798 ProSiteProfiles Protein kinase domain profile. 490 781 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco11g01723 798 FunFam Serine/threonine-protein kinase-like protein CCR4 571 789 - -
Phco11g01723 798 SUPERFAMILY Protein kinase-like (PK-like) 467 774 IPR011009 -
Phco11g01723 798 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 196 784 IPR044815 GO:0004674
Phco11g01723 798 ProSitePatterns Serine/Threonine protein kinases active-site signature. 621 633 IPR008271 GO:0004672|GO:0006468
Phco11g01723 798 SUPERFAMILY RCC1/BLIP-II 24 266 IPR009091 -
Phco11g01723 798 MobiDBLite consensus disorder prediction 454 468 - -
Phco11g01723 798 MobiDBLite consensus disorder prediction 450 473 - -
Phco11g01723 798 Gene3D Transferase(Phosphotransferase) domain 1 571 782 - -
Phco11g01723 798 SMART serkin_6 490 781 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco11g01723 798 ProSitePatterns Protein kinases ATP-binding region signature. 496 518 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g01723 Phco-Chr11 13544589 13546985 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Phco11g01723 Pkinase 8.2e-47 CL0016