Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g01715 ATGGACATTGGGTTTCAAGGATCGTGGCACCCTGGGACAGTTATCCTATGTGAGGATTTGCAACGGCGTGTCAGATATAACAATATTTTGGATGACAAGGAGGTGTATTATCTTGAGGAGGTGGTGACTGTTTCAAAAGCTTTGGATGGTGATATTGAATGTGCAAACTGCTATGCACGCGGGTTTATTAGGCCATTGCCTCCTTTGGTTGAGTTTGATAAGGGGGACCTTGTATTTGGTTTGTGTGTTGATGTGAACTACGAGGAAGCTTGGTGGGAAGGAGTTATATTTGACCACTGTGAAGGAATGGACAAGAGGAGTGTGTTTTTCCCTGATTTGGGTGATGAAATGCAGGTTGAAATTCATCAGTTACGGATTACTCAGGACTGGGATGAAATTACCGAGGAGTGGACCCGACGAGAGAACTGGGTGTTTCTTGATTTGGTTGAGGAGCAGAAGAGGAACTTGTTTGTCGCAGTTTCGGCCAAGCAGATTTGGTATGATATACGCATAAAAAAGGAATTTGAGGCGATTAGAGAGTGGACATGTAATTTGAAGTACTTGTGGACCGAGTTGATAAAGGAGGTAGTTAATCACTACTTATCTCTAACGGTAAAGGAAATTATCTCTGTCTTAAACCTTCCTAGAAGTTTATTAAATGAAACACCAGAGCAGGAATTTGCTGAAGCTATGCCCAATGTTGACTTGAACATGATCTGGCATGAGAAGGAAATTGTTGTGCATAAAGAAATTGTCCCTCCTATTAAAGAGACCTTACTTGACTTTCAAAATGAAATTAGCCCCTGTGGTGATAGTCCTTTTGAAGAAGAAAGTAGAGAAGATAGATCCTCAAGTCATTTAAGGTCCATTGTTTGGAAACCTGTGAAGTTGTCTGGGGTTGAATTATGCCCTGATGCTGTTAGGGAATATCCGCTTGCTTCCAAACGTGAAGTCAGGGCATTTTGGATGGACAAGTTACAAAAGCATCTTGTATGTCTTGGATGGAAAATTGTGTGGTCAAATAGATTAAATGTTCAACGTTACAAGTATATTGCCCCTTATACGCAGGGTCGAAGGCATTACCTTTCACTCATTGAAGTTTGTAAAGCTATGAAACAGGACCCTGACATGAAGTCCTTGCATCTCCAAAATGTTCCGAGTATAATGCATCCTACAGTTAATTGCCATCCTTCAGATTTGCCTTCTATTCTAGCTGAAGATATTCAGAATCATATCTTTCCTCCAGCTGAAAATATTCAGAATCTAGAAATCGTTCCTCCAGCTGAAGATATTCAGAGTCTAGAAATCATTCCTCCAGCTGAAAATGTTCAGAATCTAGAAATCTTTCCTCCAGCTGAAAATATTCAGAATCTAGAAATAGTTCCTCCAGCTGAAAATATTCAGAATCTAGAAATAGTTCCTCCAGCTGAAAATATTCAGAATCTAGAATTCGTTCCTCCAGCTGAAAATATTCAGAATCTAGAAATCGTTCCTCCAGCTGAAAATATTCAGAATCTAGAATTCGTTCCTCCAGCTGAAAATATTCAGAATCTAGAATTCGTTCCTCCAGCTGCAAATATTCAGAATCTAGAAATCGTTCCTCCAGCTGAAAATATTCAGAATCTAGAAATCGTTCCTCCAGCTGAAAATATTCAGAATCTAGAAATCGTTCCTCGAGCTGAAAATATTCAGAATCTAGAAATCGTTCCTCGAGCTGAAAATATTCAGAATCTAGAAATCGTTCCTCTAGCTGAAAATATTCAGAATCTAGATATCTTTTCTCCCGTTGTGTCATCTTCTCCAGTTGAAGATGAAGTTGAAGATGTACCTGAGTATTGTCCCCGGGCTGTTGTGCAATATTATCGCATGTATATATCCAATAAGAGCCGGGCTGATAAAAAAAGATGGATACTAAAGGCAAAGAAACATCTATTAGCAGAGGGATGGGTTTTTGACTATCCACCTGTATTTAATAAGAAAAGGGGAATAATATACGTGTCTCCACAAAATCGGAGATTTCCAACACTCCATGGAGCATGCAAATATTGTATTGAAGAAAGTATTCCTAATTGGGACCTTGAATGGCAGGAGATGGATAAAGATGCTTCTAGTAGTAAATCTATTACAAATCAAAAGAAGAAAAACAAGAGGGATTTGAAGGCCAACACACCCAAGTACCAAAGCAATGGATTGCCTCTACAGGTGCTAAGATCAAATAAGAGAGTGCAAAAGGTGTCTGATCCTGCTCATTTACATCATAAGCCTCTAAATATTCCATCTTATTTGATAGACAGCAACATCATCTTACCAAGATCTAAGGTTTATTATAAGACAAAAGGCAGGCACCGTACAGTCCGAACTTTGGCTGAGGGGAAAATAAACCGTAATGGAATCAAGTGTAACTGTTGCCTTAAAATATACAGCTTTGCTGGATTCGAAAAACATGTTAGTGGCAGTAGTACCTGCAGACCCTCTGCTAGTATCTTTTTGGATGATGGGAAGTCACTCTTGGACTGCCAGATACAAATGATGCAAGGTCAAAAGACAAGGGAAGCTTTTGGAAAATCATTAAGTGATTTGTCTCTAGCTGAGAATGATTACATTTGTTCAGTTTGTCACTATGGTGGTGAACTTATTTTATGTGATAAATGTCCATCCTCATTCCATAAGACGTGTCTTGGTTTGGAGGATATCCCTGAAGGTGACTGGTTTTGTCCATCATGTTGTTGCGGGATTTGTTGCCAAAGGAAAATTGATGGAGATGAGGTTGAATACTTCCTTTCTTGCATACAGTGTGAACATAAATATCATGTTAGGTGCCTGAAAAAGGGAGCTGCAGATACATCAAGATATAATGGAAACTGGTTCTGTGGAAAAGACTGTGAAAAGATATACGAGGGTCTTCATAAATTATTAGGAGAGCCAGTTCCAGTGCCTAACAATCTAACTTGGACATTGGTGAAGTTTATCAACCCTAACAGTTGTGATTTTGGTAATATTGAAAGTGACTTATTGGCAGAAAGTTACTGCAAACTCAATGTTGCTCTTTCGTTGATGCATGAATGTTTTGAGCCCCTAAAGGAATCCTTGACTTGCAGAGATCTCGTGGAAGATGTTATATTCAGCAGAAGGTCAGAGCTTAATCGAATAAATTTCCAGGGTTTCTACACTGTGCTACTTGAGAAAAATGAAGAACTGGTTAGTGTGGCAACTGTTAGGGTCCATGGGAAGAAGGTAGCTGAAATACCTCTTGTTGGTACCAGATTACAGTATCGTCGACATGGAATGTGTCGCATTTTAGTAAATGAGCTTGAAAAGAAGCTCATGAAATTAGATGTGGAGAGGCTGGTTTTGCCGGCTGTTCCTAGTGTGCTAGAGACATGGACCAGCTCTTTTGGCTTTGCAAAGATGACTAATCATGAGAGATCTCAGTTTCTGGGCTATACTTTCCTAGATTTTGAGGGTACCATTATGTGCCAAAAGTTGTTGATGAATATTGCATCTTCAGATTCAGTTCCGTTAATAGAGGATGAACGATGCGGTGTTAACCACAGTAAGTCTAGTCCAGTATGTGAAGTACACCAAGGAGAAGATATTAACGAAGATACTTGTGCAAGCAATAATGATCACCATGTTATAGGAGCTATTGACCCATTTAGAATGGTGGAGGAACCGGATCATCAAAATCAGAATGGAACAACCACTACAGTGTGCTCTTTTGATAAACAAGTTGACAGGAATGATGGTCTGTATAAGTTTGTCTACACACGAAGGAAAAACAGAAAATCATAG 3792 0.3932 MDIGFQGSWHPGTVILCEDLQRRVRYNNILDDKEVYYLEEVVTVSKALDGDIECANCYARGFIRPLPPLVEFDKGDLVFGLCVDVNYEEAWWEGVIFDHCEGMDKRSVFFPDLGDEMQVEIHQLRITQDWDEITEEWTRRENWVFLDLVEEQKRNLFVAVSAKQIWYDIRIKKEFEAIREWTCNLKYLWTELIKEVVNHYLSLTVKEIISVLNLPRSLLNETPEQEFAEAMPNVDLNMIWHEKEIVVHKEIVPPIKETLLDFQNEISPCGDSPFEEESREDRSSSHLRSIVWKPVKLSGVELCPDAVREYPLASKREVRAFWMDKLQKHLVCLGWKIVWSNRLNVQRYKYIAPYTQGRRHYLSLIEVCKAMKQDPDMKSLHLQNVPSIMHPTVNCHPSDLPSILAEDIQNHIFPPAENIQNLEIVPPAEDIQSLEIIPPAENVQNLEIFPPAENIQNLEIVPPAENIQNLEIVPPAENIQNLEFVPPAENIQNLEIVPPAENIQNLEFVPPAENIQNLEFVPPAANIQNLEIVPPAENIQNLEIVPPAENIQNLEIVPRAENIQNLEIVPRAENIQNLEIVPLAENIQNLDIFSPVVSSSPVEDEVEDVPEYCPRAVVQYYRMYISNKSRADKKRWILKAKKHLLAEGWVFDYPPVFNKKRGIIYVSPQNRRFPTLHGACKYCIEESIPNWDLEWQEMDKDASSSKSITNQKKKNKRDLKANTPKYQSNGLPLQVLRSNKRVQKVSDPAHLHHKPLNIPSYLIDSNIILPRSKVYYKTKGRHRTVRTLAEGKINRNGIKCNCCLKIYSFAGFEKHVSGSSTCRPSASIFLDDGKSLLDCQIQMMQGQKTREAFGKSLSDLSLAENDYICSVCHYGGELILCDKCPSSFHKTCLGLEDIPEGDWFCPSCCCGICCQRKIDGDEVEYFLSCIQCEHKYHVRCLKKGAADTSRYNGNWFCGKDCEKIYEGLHKLLGEPVPVPNNLTWTLVKFINPNSCDFGNIESDLLAESYCKLNVALSLMHECFEPLKESLTCRDLVEDVIFSRRSELNRINFQGFYTVLLEKNEELVSVATVRVHGKKVAEIPLVGTRLQYRRHGMCRILVNELEKKLMKLDVERLVLPAVPSVLETWTSSFGFAKMTNHERSQFLGYTFLDFEGTIMCQKLLMNIASSDSVPLIEDERCGVNHSKSSPVCEVHQGEDINEDTCASNNDHHVIGAIDPFRMVEEPDHQNQNGTTTTVCSFDKQVDRNDGLYKFVYTRRKNRKS 1263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g01715 1263 SMART agenet_At_2 75 132 IPR014002 -
Phco11g01715 1263 Gene3D - 1009 1139 - -
Phco11g01715 1263 Pfam Agenet domain 4 68 IPR008395 -
Phco11g01715 1263 SUPERFAMILY FYVE/PHD zinc finger 846 909 IPR011011 -
Phco11g01715 1263 ProSiteProfiles Zinc finger PHD-type profile. 866 911 IPR019787 -
Phco11g01715 1263 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 1044 1134 IPR016181 -
Phco11g01715 1263 CDD NAT_SF 1058 1118 - -
Phco11g01715 1263 SMART ring_2 869 908 IPR001841 -
Phco11g01715 1263 SMART ring_2 910 960 IPR001841 -
Phco11g01715 1263 MobiDBLite consensus disorder prediction 702 725 - -
Phco11g01715 1263 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 860 909 IPR013083 -
Phco11g01715 1263 PANTHER PHD FINGER PROTEIN 12 611 1217 IPR042163 GO:0003714|GO:0045892
Phco11g01715 1263 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 910 964 IPR013083 -
Phco11g01715 1263 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 1002 1163 IPR000182 GO:0016747
Phco11g01715 1263 Pfam PHD-finger 868 910 IPR019787 -
Phco11g01715 1263 SMART PHD_3 868 909 IPR001965 -
Phco11g01715 1263 SMART PHD_3 912 961 IPR001965 -
Phco11g01715 1263 Pfam Tify domain binding domain 791 843 IPR032308 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g01715 Phco-Chr11 13405825 13412064 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Phco11g01715 Agenet 2.1e-08 CL0049
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g01715 11 13405825 13412064 Phco11g01715 11 13405825 13412064 ECH
Phco11g01715 11 13405825 13412064 Phco3g00343 3 2430139 2438089 PCT