Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g01684 ATGGCCGCAGCGTTAGAGTGCTGGTCGCGCCGCGCCACCAGCGACGAGGACGACGCATTCCTTGCCGCGCATTCCTCACAGCCTCGAGACTCTTCTTCGTCTTCTCCCTCTTCCTCTCTCGTCCACAAAAAGCTCCTCAAACTTACGCGCAACGTCTCCGAGGCTCTCTCCTCCCTCAGAAACTCCCTCAACGCTATGAATGATTCTTCCAAACACGACGCGCCTCGCAACCTTGTGTGGACCACCGTCGTGCGCAATCTCAGCCACCTCTATCCCGGGACCCATCTCCCTGAGAAACTTGTCTGCAACATTCGCAGGCACTATGACTCCCTGCCTCTCAGTTATTCTCAGGCGGGGTTTGATGTGAAAGACGTGTTTCTTCACATGAAGCTGATGGAGCAAGCTTTGGAAGATGAGCAGGCTGCGATTTTGATTGAAGAGGAGGGTGATGGCGAGATTCAACTTCAGGGGTCTTTGTTCAAATTGACATTTGCTTGCAACTCTCCTATTTCATGGCCCACAATGTCATGTGCGTTGGATGGTTACTCCATTTGCTGCAAGAAGATTCAGATATTTGAGAAGAAAGGATTCACCCTTGGGATTGTGCTTCTTCTTGTACTGTCTAGTGGTGGGCAAGATAAGTTGATCAGGACCTGGGTTGAAAGTGCTCTCAAGATTTCCATGAAGAGGCCTAAAGCCGGTGGCGTGAAGCTTCCCTTTGGGCTTTGTGGATGTCAAGAAGAGAACACCAAAGGGAGAGGACATGGAGAGATTGTGGAAGACGGTGGTGATGCATGTTGTCGAAATGGGTTTGAGAATTTGAGCCAAAAGATTCAGCTTCAGGTGCCATTACCTAGTTCATCTTTTCTTGTAGTGGTAGATGAATGGCAAACTATTCAATCAGGTGGGGATAGTATTGAAAAATGGTTGTTGAACTCTGATAGTCTTGAGTTTGCAGAACAGATTGGGCCCAATTCGTATAAGGGGATGTATATGGGGAAAAAAGTTGGCATTGAGAAGCTTAGAGGGTGTGAGAAAGGGAGCTCTTATGAGTTTGAGCTCAGGAAAGACCGGCTGGCACTGATGACTTGTGGTCATAGAAGTATTATGCAGTTTTGTGGTGTGTGTGTAGATGAAAACTATGGATTATGTGTATTGACGAAACTTGTGGAAGGTGGGTCCGTTCATGACTTAATGTTAAAGAACAAGAAGCTTCCGAGCAAGGATGTTGTAAGAATTGCAGTTGATGTGGCTGAAGGGATCAAGTTTATGAATGATCACGGTGTTGCATACAGAGACCTTAATACGCAGAGGATTCTTTTGGATAAGCATGGGAATGCTTGCTTGGGGGATATGGGTATTGTCACTGCCTGCAAGAGTGTTGGAGAGGCACTGGATTATGAAACTGATGGTTATCGATGGCTAGCACCAGAGATAATTGCTGGTGATCCAGAGAGTGTGACAGAGACATGGATGAGTAACGTTTATAGTTTTGGAATGATTATTTGGGAGATGGTAACTGGTGAGGCAGCATATTTGGCATATTCACCCGTGCAAGCAGCAGTTGGAATTGCTGCTTGTGGCCTAAGACCTGAAATCCCCAAGGACTGCCCTCAAACTCTAAAATCTCTCATGATAAAGTGCTGGAACAACACCCCTTCAAAACGTCCTAACTTCTCTGAAATTTTGGCCATATTGCTACGAACAAACAACTACAATAGTTCCAATCGCTTACTGTACTATATGCTTCCAACTAAGAGACCTTGCGAAGTACTGGTTGCAGTAGAAGAGGTGACCGACAACAACGACATCTGCAGCAGCAGTTTCTCCAAGAAGAATCGGATCGCGGCCGGAACCGCCGATTCCACGGTGATAAGCGACGACACCACCGTCCGGAGCTTCATCAACAGCAGCAGCGAAAGCGGGAACACGAGTGAGGGAGTGTCGGCCATGGCTTTGGGCGACTCTAATCCTCCGGACATCGATGAGGATCTCCACAGCCGTCAGCTTGCCGTGTATGGTCGAGAGACCATGCGGAGGCTGTTTGGCTCCAACGTCCTGGTCTCCGGGATGCAAGGTCTTGGCGTCGAGATTGCGAAGAATCTCATTCTTGCTGGTGTCAAATCTGTGACCTTGCATGATGAGGGGAATGTGGAGCTGTGGGATCTATCCAGTAACTTTGTATTTTCAGAGAATGATGTTGGTAAAAACAGGGCAACATCTTCTGTTAGTAAGCTACAGGAGCTCAACAATGCCGTGATTGTCCAAAGCTTGACTACTCATCTGACAAAAGAGCAACTTTCTAATTTTCAAGCTGTTGTTTTTACTGATATCAGTCTTGAGAAGGCCTGTGAGTTCAATGATTATTGCCGCAGTCATCAGCCTCCTATTGCCTTTATTAAAACTGAAGTTAGAGGCCTTTTTGGTTCTGTGTTCTGTGATTTTGGGCCTGAGTTTACTGTTGTTGATGTTGATGGAGAAGAACCCCACAGTGGCATAATTGCATCCATAAGCAATGACAACCCTTCTCTAGTATCATGTGTTGATGATGAGAGGCTTGAGTTTCAGGACGGAGATCTTGTTGTATTCTCTGAAATTCATGGTATGAAAGAATTGAATGATGGAAAACCTAGGAAGATTAAAAATGCTAGAGCATATTCGTTTACTCTTGAAGAAGACACTACAAATTATGGTATGTATGAGAAAGGTGGTATTGTTACACAGGTCAAACAAACAAAGGTATTGAACTTTAAGTCACTGAGGGAAGCACTCAGTGATCCTGGTGATTTTCTTCTGAGTGATTTTTCTAAGTTTGACCGCCCACCTCTCCTTCACTTAGCATTCCAGGGTTTGGATAAATTAATTTCTGAGCTAGGTCGCTTACCTGTTGCTGGTTCGGAGGAAGATGCACAGAAGCTTATATCTATTGTCAGTGAAATTAATGACAACACTAGTGATGGGAAATTAGAAGATATTAATCCAAAACTTTTGAGAAACTTTGCCTTTGGTGCCAGGGCAGTGTTGAATCCAATGGCTGCTATGTTTGGTGGAATTGTCGGACAGGAGGTTGTCAAAGCGTGCTCTGGGAAATTTCATCCACTTTTTCAGTTCTTCTACTTTGACTCTGTGGAATCACTCCCTTCAGAACCAGTGGACCCAGATGATTTCAGACCAGTAAATGGTCGTTATGATGCACAGATTTCAGTATTTGGACGGAAATTACAGAAAAAATTAGAGGATTCTAAAGTGTTTGTTGTTGGATCTGGTGCTTTGGGATGTGAATTTTTAAAAAATCTTGCTCTCATGGGAGTTTCTTGTGGCAGTCAGGGTAAGCTCACTATTACTGATGATGATGTGATAGAGAAGAGTAACCTAAGCAGGCAGTTTCTTTTCCGTGATTGGAATATTGGACAGGCTAAGTCCACAGTTGCTGCTTCAGCTTCAGCATCCATAAATCCTAGTTTTAATATTGAAGCTCTACAAAATCGGGTTGGCACAGAAACTGAAAATGTGTTCAACGATACCTTCTGGGAAAACCTGAATGTTGTTATAAATGCCCTAGACAATGTTAATGCAAGGTTATATGTTGATCAGAGATGCTTGTATTTCCAAAAGCCTCTTCTTGAGTCTGGAACTCTTGGAGCCAAATGCAATACTCAGATGGTTATTCCTCACCTGACAGAAAACTATGGTGCATCAAGGGATCCTCCTGAGAAACAGGCTCCAATGTGCACTGTACACTCATTTCCACACAACATTGACCATTGCTTGACATGGGCACGATCTGAATTTGAGGGTCTGCTTGAGAAAACTCCAGCTGAAGTAAATGCATATTTGTCTAACCCAAGTGAATATACCAGTTCAATGAGAAATGCTGGTGATGCTCAAGCAAGGGATAACTTGGAGCGTGTTCTTGAGTGCCTGGACAGGGACAAGTGTGAAACTTTTGAAGATTGTATCAGTTGGGCTCGGCTGAAGTTTGAGGATTATTTTGCCAACCGGTTGAAGCAGTTGATCTATACTTTTCCTGAAGATGCTGCAACAAGTACTGGAGCTCCTTTCTGGTCCGCACCAAAAAGATTCCCCCATCCACTGCAGTTCTCATCCTCTGATGTGGGTCATCGAAATTTTGTGTTGGCAACTTCAATTTTACGTGCAGAAACATTTGGTATCCCAATCCCTGATTGGGTTAAGAACACTAGGAAGGTGGCCGAAGCTGTGGATAGGTTGATAGTACCTGACTTTCAGCCCAAGAAAGGTGTGAAAATAGTGACAGATGAGAAGGCTACCAGTCTCGCTACAGCTTCTATAGATGATGCAGCAGTTATTAATGACCTGATAGTTGAGTTAGAGAGGTGTCGGGCTAAGCTGCCATCAGAGTTCAGGATGAAACCAATTCAGTTTGAGAAGGATGATGATACAAACTACCATATGGACGTGATTGCTGGGCTTGCTAACATGAGGGCTCGGAATTACAGCATTCCTGAGGTCGACAAGCTCAAAGCCAAGTTTATTGCTGGACGGATCATTCCTGCAATTGCAACCTCGACTGCCATGGCCACTGGTCTTGTCTGCCTTGAGCTTTATAAAGTTTTGGATGGAGGGCACAAAGTTGAAGACTACAGAAACACATTTGCTAACTTGGCACTGCCTCTCTTTTCAATTGCTGAACCAGTTCCACCGAAGATTATCAAGCATCAAGATATGAATTGGACAGTTTGGGATAGATGGATTGTTGGAGATAATCCTACCTTGAGAGAACTTCTGGAGTGGCTGAAGGCAAAGGGGTTGAATGCTTATAGTATTTCCTGTGGAAGTTGCCTGCTCTATAATAGCATGTTCCCTAAGCATAAAGAGCGAATGGACAAAAAGGTAGCAGATCTGGGAAGGGATGTAGCCAAGTTGGACATTCCGTCATACCGTCGCCATTTGGACGTTGTTGTCGCATGTGAGGATGATAATGATAATGACATTGACATCCCTCAAATATCCATTTATTTCCGTTAG 5007 0.445 MAAALECWSRRATSDEDDAFLAAHSSQPRDSSSSSPSSSLVHKKLLKLTRNVSEALSSLRNSLNAMNDSSKHDAPRNLVWTTVVRNLSHLYPGTHLPEKLVCNIRRHYDSLPLSYSQAGFDVKDVFLHMKLMEQALEDEQAAILIEEEGDGEIQLQGSLFKLTFACNSPISWPTMSCALDGYSICCKKIQIFEKKGFTLGIVLLLVLSSGGQDKLIRTWVESALKISMKRPKAGGVKLPFGLCGCQEENTKGRGHGEIVEDGGDACCRNGFENLSQKIQLQVPLPSSSFLVVVDEWQTIQSGGDSIEKWLLNSDSLEFAEQIGPNSYKGMYMGKKVGIEKLRGCEKGSSYEFELRKDRLALMTCGHRSIMQFCGVCVDENYGLCVLTKLVEGGSVHDLMLKNKKLPSKDVVRIAVDVAEGIKFMNDHGVAYRDLNTQRILLDKHGNACLGDMGIVTACKSVGEALDYETDGYRWLAPEIIAGDPESVTETWMSNVYSFGMIIWEMVTGEAAYLAYSPVQAAVGIAACGLRPEIPKDCPQTLKSLMIKCWNNTPSKRPNFSEILAILLRTNNYNSSNRLLYYMLPTKRPCEVLVAVEEVTDNNDICSSSFSKKNRIAAGTADSTVISDDTTVRSFINSSSESGNTSEGVSAMALGDSNPPDIDEDLHSRQLAVYGRETMRRLFGSNVLVSGMQGLGVEIAKNLILAGVKSVTLHDEGNVELWDLSSNFVFSENDVGKNRATSSVSKLQELNNAVIVQSLTTHLTKEQLSNFQAVVFTDISLEKACEFNDYCRSHQPPIAFIKTEVRGLFGSVFCDFGPEFTVVDVDGEEPHSGIIASISNDNPSLVSCVDDERLEFQDGDLVVFSEIHGMKELNDGKPRKIKNARAYSFTLEEDTTNYGMYEKGGIVTQVKQTKVLNFKSLREALSDPGDFLLSDFSKFDRPPLLHLAFQGLDKLISELGRLPVAGSEEDAQKLISIVSEINDNTSDGKLEDINPKLLRNFAFGARAVLNPMAAMFGGIVGQEVVKACSGKFHPLFQFFYFDSVESLPSEPVDPDDFRPVNGRYDAQISVFGRKLQKKLEDSKVFVVGSGALGCEFLKNLALMGVSCGSQGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASASASINPSFNIEALQNRVGTETENVFNDTFWENLNVVINALDNVNARLYVDQRCLYFQKPLLESGTLGAKCNTQMVIPHLTENYGASRDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYLSNPSEYTSSMRNAGDAQARDNLERVLECLDRDKCETFEDCISWARLKFEDYFANRLKQLIYTFPEDAATSTGAPFWSAPKRFPHPLQFSSSDVGHRNFVLATSILRAETFGIPIPDWVKNTRKVAEAVDRLIVPDFQPKKGVKIVTDEKATSLATASIDDAAVINDLIVELERCRAKLPSEFRMKPIQFEKDDDTNYHMDVIAGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKVLDGGHKVEDYRNTFANLALPLFSIAEPVPPKIIKHQDMNWTVWDRWIVGDNPTLRELLEWLKAKGLNAYSISCGSCLLYNSMFPKHKERMDKKVADLGRDVAKLDIPSYRRHLDVVVACEDDNDNDIDIPQISIYFR 1668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g01684 1668 NCBIfam ubiquitin-activating enzyme E1 660 1668 IPR018075 -
Phco11g01684 1668 Pfam Ubiquitin-activating enzyme E1 four-helix bundle 912 981 IPR032420 -
Phco11g01684 1668 ProSiteProfiles Protein kinase domain profile. 316 573 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco11g01684 1668 SMART UBA_e1_C_a_2 1541 1663 IPR018965 -
Phco11g01684 1668 Gene3D - 1235 1510 IPR042063 -
Phco11g01684 1668 Gene3D - 657 774 IPR042449 -
Phco11g01684 1668 PANTHER UBIQUITIN-ACTIVATING ENZYME E1 665 1045 IPR045886 -
Phco11g01684 1668 FunFam Ubiquitin-activating enzyme E1 2 1576 1666 - -
Phco11g01684 1668 Pfam ThiF family 666 1045 IPR000594 -
Phco11g01684 1668 FunFam Ubiquitin-activating enzyme E1 1 1083 1245 - -
Phco11g01684 1668 SUPERFAMILY Protein kinase-like (PK-like) 307 593 IPR011009 -
Phco11g01684 1668 CDD Ube1_repeat1 665 1050 - -
Phco11g01684 1668 ProSitePatterns Ubiquitin-activating enzyme signature 1. 1025 1033 IPR018074 -
Phco11g01684 1668 Pfam Protein tyrosine and serine/threonine kinase 352 565 IPR001245 GO:0004672|GO:0006468
Phco11g01684 1668 FunFam Ubiquitin-activating enzyme E1 2 1235 1510 - -
Phco11g01684 1668 PRINTS Ubiquitin-activating enzyme E1 signature 1311 1338 IPR000011 GO:0008641|GO:0036211
Phco11g01684 1668 PRINTS Ubiquitin-activating enzyme E1 signature 1110 1133 IPR000011 GO:0008641|GO:0036211
Phco11g01684 1668 PRINTS Ubiquitin-activating enzyme E1 signature 687 711 IPR000011 GO:0008641|GO:0036211
Phco11g01684 1668 PRINTS Ubiquitin-activating enzyme E1 signature 1157 1182 IPR000011 GO:0008641|GO:0036211
Phco11g01684 1668 PRINTS Ubiquitin-activating enzyme E1 signature 802 829 IPR000011 GO:0008641|GO:0036211
Phco11g01684 1668 FunFam ubiquitin-like modifier-activating enzyme 1 828 909 - -
Phco11g01684 1668 Gene3D - 828 909 IPR042302 -
Phco11g01684 1668 Pfam Ubiquitin-activating enzyme E1 FCCH domain 840 910 IPR032418 -
Phco11g01684 1668 SUPERFAMILY Activating enzymes of the ubiquitin-like proteins 1058 1558 IPR035985 GO:0008641
Phco11g01684 1668 Pfam Ubiquitin fold domain 1574 1663 IPR018965 -
Phco11g01684 1668 Gene3D Transferase(Phosphotransferase) domain 1 309 572 - -
Phco11g01684 1668 MobiDBLite consensus disorder prediction 19 38 - -
Phco11g01684 1668 Pfam Ubiquitin-activating enzyme, SCCH domain 1250 1503 IPR019572 -
Phco11g01684 1668 MobiDBLite consensus disorder prediction 635 660 - -
Phco11g01684 1668 Gene3D - 1083 1561 - -
Phco11g01684 1668 MobiDBLite consensus disorder prediction 635 651 - -
Phco11g01684 1668 FunFam Ubiquitin-activating enzyme E1 2 656 774 - -
Phco11g01684 1668 FunFam Ubiquitin-activating enzyme E1 1 902 1073 - -
Phco11g01684 1668 Pfam ThiF family 1063 1559 IPR000594 -
Phco11g01684 1668 Gene3D - 1576 1666 IPR038252 -
Phco11g01684 1668 Gene3D - 785 1073 - -
Phco11g01684 1668 ProSitePatterns Ubiquitin-activating enzyme active site. 1242 1250 IPR033127 -
Phco11g01684 1668 CDD Ube1_repeat2 1082 1621 - -
Phco11g01684 1668 SUPERFAMILY Activating enzymes of the ubiquitin-like proteins 660 1047 IPR035985 GO:0008641
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g01684 Phco-Chr11 12982670 12997603 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-7 Phco11g01684 ThiF 8e-75 CL0063
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g01684 11 12982670 12997603 Phco11g01684 11 12982670 12997603 ECH
Phco11g01684 11 12982670 12997603 Phco3g00363 3 2614825 2621460 PCT