Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g01676 ATGGGAGGTACCTCACCTTGTGCTTCTTGCAAGTTGCTGAGACGTCGTTGCTCCAAGGAATGCATCTTTGCTCCTTACTTTCCTTCTGATGACCCTCGCAAGTTTGCCATCGTGCATAAGGTCTTTGGTGCTAGCAATGTCAGTAAAATGCTCCAGGAGCTTCCAGTTCATCAAAGAGCAGATGCTGTGAGCAGTTTAGTTTATGAGGCAAATGCAAGAGTGAGAGATCCAGTGTATGGATGTGTTGGAGCCATATCATACCTACAAAACCAGGTTTCACAGCTGCAAATGCAGCTTGCAGTGGCTCAAGCAGAGATTCTATGCGTCCAGATGCAGCAACAAGAACCTACCTTAACCACACAAGTATACCAAGATGACAAATCACTGCTCCTATCAGTACACAATAACTATGAAATTCTTCCTCCTCAGTATCTTCACTTTCCTTCATCCTCTTCCTCCTCTTCAAATGTGCTCCAAGACCCTCATGATCAGTCTCTTAAGAGAGAGTCTTTTTGGACTTGA 522 0.4464 MGGTSPCASCKLLRRRCSKECIFAPYFPSDDPRKFAIVHKVFGASNVSKMLQELPVHQRADAVSSLVYEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCVQMQQQEPTLTTQVYQDDKSLLLSVHNNYEILPPQYLHFPSSSSSSSNVLQDPHDQSLKRESFWT 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g01676 173 Coils Coil 85 105 - -
Phco11g01676 173 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 148 - -
Phco11g01676 173 MobiDBLite consensus disorder prediction 151 173 - -
Phco11g01676 173 Pfam Lateral organ boundaries (LOB) domain 6 103 IPR004883 -
Phco11g01676 173 ProSiteProfiles LOB domain profile. 5 106 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g01676 Phco-Chr11 12914979 12915939 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Phco11g01676 LOB 7.7e-43 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g01676 11 12914979 12915939 Phco11g01676 11 12914979 12915939 ECH
Phco11g01676 11 12914979 12915939 Phco3g00373 3 2717314 2717872 ECH
Phco11g01676 11 12914979 12915939 Phco3g00373 3 2717314 2717872 PCT