Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g01656 ATGACCACTTCTTTCTCTGACCTTCTCTCTTCTCCCACCGACCACAACCTAGGAGGCTCCGAAAGACCTCAAGAGGTGTCGGATCAAACAGGTTCTTCTGGTCTGCCGAAATTCAAGTCCACACCACCTCCATCTCTCCCTCTTTTTCACCCTCAAAATCATCCTCTTCCACCCATTTCTCCCATTTCTCCTTCTTACTTTAACATTCCTCATGGGTTAAGCCTTGCTGAACTTCTTGACTCCCCAGTTCTCCTTCACTCTTCTAACGTTTTGCCATCTCCCACCACTGGATCATTTGGTACTGGTCACGGCTTCAATTGGAAGAGCAGCTATGGGGAAAGCCAGCACCATGTAAAAGAAGAAGACAAAAGCTTCTCAAGTTTCTCTTTCCAAACACAAACACAGATTCCTCTTGCATCTTCAACTGGATTTCAATCTTCAACCGGCATAGTTCAAACCGTGTGTAACCAATTTCAATGCACAACTTCTTTTGGGTGGAGTTTTCCCGAAACTGTTAAACAAGATGGTTTTTCTTCAAGAATGAGTATGAATGTGGTGAAAACTGAAACCTCTTCTGGGATGCAGGGTTTTAACTCTGAGAATAACCGCAACAGTTCTGGTTTCCAATCAGATTATAACAATTACCAGCCACAAGTTCAGACCTTAAGCAGAAGATCAGATGATGGGTACAATTGGAGAAAATATGGGCAAAAGCAAGTGAAAGGAAGTGAAAATCCAAGAAGCTACTACAAGTGCACATACCCCAATTGTCCAACAAAGAAAAAGGTTGAGAGGTCCTTAGATGGACAAATTACTGAGATTGTTTACAAAGGCAGTCATAATCATCCCAAGCCTCAGGCTACCAAGAGGAACTCATTGTCTGCCTCATCACTTGCAATTCCTCATTCAAATGGTGTCAACAATGAAATAACACAAGTCACTCATCAAATGGATTCGGTTGCAACTCCAGAAAACTCATCAATATCAATGGAAGATGATGATTTTGGTCAGAGCAAATCAGGAGGAGATGAGTTTGATAATAACGAACCTGATGCCAAAAGATGGAGAGTAGAAGGTGAAAATGAGGGTATATCTGCTGTTGGAAGTAGAACAGTGAGAGAACCCAGAGTCGTGGTTCAGACAACCAGTGACATCGATATTCTAGATGATGGATACAGATGGAGGAAATATGGCCAAAAAGTAGTCAAGGGAAATCCAAACCCAAGGAGTTACTACAAGTGCACATTCCCAGGATGTCCAGTGAGGAAGCACGTAGAGAGAGCCTCACATGACCTAAGAGCAGTGATCACAACCTATGAGGGAAAGCACAACCATGACGTGCCTGCAGCACGTGGCAGTGGCAGCAACTCAATCGGAAGATCAGTGCCTATAAACACTGCCACAGACAGCAACAATAGTGCAGCCACTTCTATATACATCAATTCTCATCAGAATCTCAGACCACCAGCACCAGAAAGGACACAACACTTCAACTCCAATATGCAGCAGGGCTCAGGAAGTTTTGGATTCTCGGGGTTTGGAAATCCATTAATGGGGTCTTACATGAACCAACAATCTGACAATGTGTTCACCTCTAGAGCCAAGGAGGAGCCAGGAGATGACTCGTTTCTTGACTCTTTGCTATGTTAA 1650 0.4358 MTTSFSDLLSSPTDHNLGGSERPQEVSDQTGSSGLPKFKSTPPPSLPLFHPQNHPLPPISPISPSYFNIPHGLSLAELLDSPVLLHSSNVLPSPTTGSFGTGHGFNWKSSYGESQHHVKEEDKSFSSFSFQTQTQIPLASSTGFQSSTGIVQTVCNQFQCTTSFGWSFPETVKQDGFSSRMSMNVVKTETSSGMQGFNSENNRNSSGFQSDYNNYQPQVQTLSRRSDDGYNWRKYGQKQVKGSENPRSYYKCTYPNCPTKKKVERSLDGQITEIVYKGSHNHPKPQATKRNSLSASSLAIPHSNGVNNEITQVTHQMDSVATPENSSISMEDDDFGQSKSGGDEFDNNEPDAKRWRVEGENEGISAVGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTFPGCPVRKHVERASHDLRAVITTYEGKHNHDVPAARGSGSNSIGRSVPINTATDSNNSAATSIYINSHQNLRPPAPERTQHFNSNMQQGSGSFGFSGFGNPLMGSYMNQQSDNVFTSRAKEEPGDDSFLDSLLC 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g01656 549 MobiDBLite consensus disorder prediction 285 303 - -
Phco11g01656 549 SUPERFAMILY WRKY DNA-binding domain 225 285 IPR036576 GO:0003700|GO:0006355|GO:0043565
Phco11g01656 549 FunFam WRKY transcription factor 33 375 441 - -
Phco11g01656 549 Pfam WRKY DNA -binding domain 227 283 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco11g01656 549 Pfam WRKY DNA -binding domain 389 445 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco11g01656 549 ProSiteProfiles WRKY domain profile. 227 285 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco11g01656 549 MobiDBLite consensus disorder prediction 40 55 - -
Phco11g01656 549 SUPERFAMILY WRKY DNA-binding domain 380 448 IPR036576 GO:0003700|GO:0006355|GO:0043565
Phco11g01656 549 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 80 478 IPR044810 GO:0003700
Phco11g01656 549 MobiDBLite consensus disorder prediction 277 303 - -
Phco11g01656 549 MobiDBLite consensus disorder prediction 1 39 - -
Phco11g01656 549 Gene3D WRKY domain 213 286 IPR036576 GO:0003700|GO:0006355|GO:0043565
Phco11g01656 549 MobiDBLite consensus disorder prediction 336 352 - -
Phco11g01656 549 FunFam WRKY transcription factor 215 286 - -
Phco11g01656 549 MobiDBLite consensus disorder prediction 318 352 - -
Phco11g01656 549 SMART WRKY_cls 388 447 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco11g01656 549 SMART WRKY_cls 226 284 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco11g01656 549 MobiDBLite consensus disorder prediction 1 55 - -
Phco11g01656 549 Gene3D WRKY domain 375 441 IPR036576 GO:0003700|GO:0006355|GO:0043565
Phco11g01656 549 ProSiteProfiles WRKY domain profile. 383 448 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco11g01656 549 MobiDBLite consensus disorder prediction 190 213 - -
Phco11g01656 549 MobiDBLite consensus disorder prediction 318 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g01656 Phco-Chr11 12723586 12726505 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Phco11g01656 WRKY 2.6e-25 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g01656 11 12723586 12726505 Phco11g01656 11 12723586 12726505 ECH
Phco11g01656 11 12723586 12726505 Phco3g00430 3 3148224 3151021 PCT