Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g01638 ATGGAGAGTAATCCAAATATCTTAATGCAAAGATATGAGTTAGGAAGATTACTTGGCCAGGGAACCTTTGGAAAGGTTTACTATGCTAGAAGTGCAATAACTAACCAGAGTGTGGCTATTAAAATGATTGACAAAGATAAGATTATGAGAACGGGGCAAGTTGAACAAATCAGGCGTGAAATATCTGTTATGAGATTGGCTAAACACCCCAATATTATACAGCTTTTTGAGGTTATGGCTAACAAGAGTAAGATTTACTTTGTTATGGAATATGCTAAAGGTGGTGAGCTCTTCAACAAGGTGGCCAAAGGAAAACTCAAGGAAGATGTCGCACACAAGTATTTTAAGCAGCTAATTAATGCTGTGGATTTTTGTCACAGTAGAGGTGTGTTCCACAGAGACATAAAGCCTGAGAACATTCTATTGGATGAAAATGGGAATCTAAAGGTCTCTGATTTCGGCTTAAGTGCACTTGTTGAATCCAAGAGGCAGGATGGTTTACTCCATACTCCTTGTGGCACACCTGCTTATGTTGCTCCTGAAGTCATCAAAAGGAAGGGATATGATGGTACAAAAGCTGATATTTGGTCTTGTGGAATAGTTCTGTTTGTCTTGTTGGCAGGTTATCTGCCTTTTCATGACCCAAATTTGATAGAGATGTATAGGAAGATAAGCAAAGCAGAATTAAAATGTCCTAATTGGTTCCCACCTGAAGTATGCAAGCTATTGGGCATGATGTTGGATCCAAATCCTGAGACTAGGATCCCCATATCTAATATTAGGGAATATTGTTGGTTTAAGAAAGAACCTAATGTTAAAAACAAAAGACCTGTAGTGGAAAACAACACTGTCTCTTCTTCAGGAACTGTTCTTCCTGATCAAAATGATTGTGATGGTTTAGCAGCAGAAGCAAACGGAGATTCAGTTGCCCCCTTAAGTATAAATGCCTTTGACATTATCTCCCGTTCTGTGGGTTTTGATCTTTCTAGATTCTTTGATGAAAGTTTTCAGAAAAAGGAAGCAAGATTTAGTTCAAGGTTACCTGCAAATGTCATCATCTCCAAGCTGGAAGACATTGCTAAGCAACTGAGGATGAAAATAAAGAAAAAAGCTGCGGGTTTGTTGAAATTAGAGGGCTTGAAGGAAGGTAGGAAGGGGGTTTTAACCATTGATGCAGAGATCTTTCAAGTTACGCCTTGTTTCCATTTGGTGGAGGTAAAAAAATCAAATGGAGATACATTGGAGTATCAGAAAATATTGAAAGAGGAAATTAGGCCTGCTCTTCAGGATATTGTTTGGGTCTGGCAAAGTGACCAACAACTGCAATCACAACCGTCAGAGGAACAGGTACATACAGATGACCAGCAGCAGCAACAACCACAGTCATAA 1389 0.3909 MESNPNILMQRYELGRLLGQGTFGKVYYARSAITNQSVAIKMIDKDKIMRTGQVEQIRREISVMRLAKHPNIIQLFEVMANKSKIYFVMEYAKGGELFNKVAKGKLKEDVAHKYFKQLINAVDFCHSRGVFHRDIKPENILLDENGNLKVSDFGLSALVESKRQDGLLHTPCGTPAYVAPEVIKRKGYDGTKADIWSCGIVLFVLLAGYLPFHDPNLIEMYRKISKAELKCPNWFPPEVCKLLGMMLDPNPETRIPISNIREYCWFKKEPNVKNKRPVVENNTVSSSGTVLPDQNDCDGLAAEANGDSVAPLSINAFDIISRSVGFDLSRFFDESFQKKEARFSSRLPANVIISKLEDIAKQLRMKIKKKAAGLLKLEGLKEGRKGVLTIDAEIFQVTPCFHLVEVKKSNGDTLEYQKILKEEIRPALQDIVWVWQSDQQLQSQPSEEQVHTDDQQQQQPQS 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g01638 462 ProSitePatterns Protein kinases ATP-binding region signature. 18 41 IPR017441 GO:0005524
Phco11g01638 462 MobiDBLite consensus disorder prediction 443 462 - -
Phco11g01638 462 FunFam Non-specific serine/threonine protein kinase 309 433 - -
Phco11g01638 462 ProSiteProfiles NAF domain profile. 309 333 IPR018451 GO:0007165
Phco11g01638 462 SMART serkin_6 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco11g01638 462 Gene3D Transferase(Phosphotransferase) domain 1 3 308 - -
Phco11g01638 462 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 4 428 - -
Phco11g01638 462 CDD CIPK_C 315 429 - -
Phco11g01638 462 Gene3D Kinase associated domain 1, KA1 309 434 - -
Phco11g01638 462 FunFam Non-specific serine/threonine protein kinase 92 273 - -
Phco11g01638 462 Pfam Protein kinase domain 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco11g01638 462 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Phco11g01638 462 ProSiteProfiles Protein kinase domain profile. 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco11g01638 462 Pfam NAF domain 311 369 IPR004041 GO:0007165
Phco11g01638 462 FunFam Non-specific serine/threonine protein kinase 3 91 - -
Phco11g01638 462 SUPERFAMILY Protein kinase-like (PK-like) 8 267 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g01638 Phco-Chr11 12587173 12588561 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Phco11g01638 Pkinase 1.7e-74 CL0016