Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco11g01630 ATGAGCTGTTACATTTATGGTTTATTCTTGTGGATTCTTAGACAATATGAAGAAAAGAAGCAAAAGCTAAATGCTGCTGTAATCTACAGAGCCACAGATCTGTGCATGTTTGCTGGAAGAAATGATGAGAAAAAGTTCAGATTGTCAGATATGATGCCAAATGCATGGTTCTATAAGCTCAAAGACATGAGCAAATCAAGGAAGAAAAATGGCCCTCATGTTATGAAGAACAAAGTAATTACCTCACCAACAACCTCCCAAAGGTCACAGCCAAGATACTCTCATTGTTTCTCCATTGAACCCAACATAGCTGGTAAGTTATACAATTCTCCTATTTACACTAAGCACTCAGACAACATATTCATTGATTCACCAAGAAGGTCATCTAAAAGAAGAACTAAGAGAAAAACCATTTATAAGCCTTCTCCCACAGTTGTCTCTTCACCAGTCATAGAAAGTTTTAGTTGTCATTCCACAAATTGGATTAAGCCAAATCAACCTCAGTCTCCTGACTATTATCTCTCCTCCTCCGAGAGTTCTTCTGAATCAAACTTCCATGAATATGTTTCATCCGAGTCTGAGTGTGACAAGTTCACTATTCCTGACCTGCTTAATGGAGTAGCCTCTGAATGCAGTTGTAGAGTTAGCTCTTCCACCAATGACATAATCATTGACATGAAAAATGAACCATTCACTGGAAATTGTGAAAATCTTGATGGGTTTGACACAATTTCACAATTAGGCCTTCCTCCGATATTGACAAAGCCAGTGAAGTTTGATGATAAGGTCATTGAAGCCATTGAGTTGAGAAGATCAACTAAATTTGATGAGGTAAAGTCTCATCAATCTCTAGCTGTTAAAGTTAGCAAAGAGGAAAGCAGTAGAACTAAGAGAGAGAGAAAAACCAGTCCAGTATCTAGAATTTCCTCTGCTAATTCTACAGGTATAAGACTTAGAGTGAATTCTCCAAAACTGGCAAGCAAGAAAGTTCAAGCCTATGCCAGAAGGAGTGTGTCATCCAAAGCAGGCAAGGCCTCAGTGGATACAGGCTTTCCAGAGGGATTTGCAGTTGTTAAGTCCTCACTTGATCCACAAAGAGACTTCAGGGAGTCAATGGTGGAGATGATAGTGGAGAACAATATCCGAGCATCAAAAGATTTGGAGAACTTGCTTGCCTGCTATCTTTCACTGAACTCAAGGGAATACCATGATCTCATTGTTAAAGCATTTGAGCAAATTTGGTATGACATGGCTCTACTTGGAATGTAA 1269 0.3901 MSCYIYGLFLWILRQYEEKKQKLNAAVIYRATDLCMFAGRNDEKKFRLSDMMPNAWFYKLKDMSKSRKKNGPHVMKNKVITSPTTSQRSQPRYSHCFSIEPNIAGKLYNSPIYTKHSDNIFIDSPRRSSKRRTKRKTIYKPSPTVVSSPVIESFSCHSTNWIKPNQPQSPDYYLSSSESSSESNFHEYVSSESECDKFTIPDLLNGVASECSCRVSSSTNDIIIDMKNEPFTGNCENLDGFDTISQLGLPPILTKPVKFDDKVIEAIELRRSTKFDEVKSHQSLAVKVSKEESSRTKRERKTSPVSRISSANSTGIRLRVNSPKLASKKVQAYARRSVSSKAGKASVDTGFPEGFAVVKSSLDPQRDFRESMVEMIVENNIRASKDLENLLACYLSLNSREYHDLIVKAFEQIWYDMALLGM 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco11g01630 422 MobiDBLite consensus disorder prediction 288 304 - -
Phco11g01630 422 MobiDBLite consensus disorder prediction 288 309 - -
Phco11g01630 422 Coils Coil 422 422 - -
Phco11g01630 422 Pfam Transcriptional repressor, ovate 361 417 IPR006458 -
Phco11g01630 422 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 159 417 IPR038933 GO:0045892
Phco11g01630 422 ProSiteProfiles OVATE domain profile. 357 416 IPR006458 -
Phco11g01630 422 NCBIfam uncharacterized plant-specific domain TIGR01568 355 417 IPR006458 -
Phco11g01630 422 Pfam DNA-binding domain 44 89 IPR025830 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco11g01630 Phco-Chr11 12537096 12538761 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Phco11g01630 Ovate 4.8e-25 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g01630 11 12537096 12538761 Phco11g01630 11 12537096 12538761 ECH
Phco11g01630 11 12537096 12538761 Phco3g00460 3 3411808 3412938 PCT